View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10931_low_10 (Length: 392)

Name: NF10931_low_10
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10931_low_10
NF10931_low_10
[»] chr5 (23 HSPs)
chr5 (236-377)||(30715154-30715296)
chr5 (103-209)||(30715613-30715719)
chr5 (103-209)||(30747120-30747226)
chr5 (103-209)||(30057686-30057792)
chr5 (283-377)||(30058119-30058213)
chr5 (11-104)||(30057353-30057446)
chr5 (11-104)||(30679781-30679874)
chr5 (11-104)||(30746820-30746913)
chr5 (236-366)||(30433711-30433837)
chr5 (11-104)||(30715959-30716052)
chr5 (103-209)||(30679448-30679554)
chr5 (13-103)||(30245301-30245393)
chr5 (236-345)||(29869947-29870058)
chr5 (318-377)||(30244496-30244555)
chr5 (13-102)||(40661077-40661164)
chr5 (236-372)||(30398304-30398425)
chr5 (318-377)||(30747609-30747667)
chr5 (295-369)||(29851239-29851313)
chr5 (13-99)||(43200587-43200670)
chr5 (17-73)||(17980776-17980832)
chr5 (154-209)||(29869516-29869571)
chr5 (295-369)||(29870150-29870219)
chr5 (17-88)||(30210785-30210856)
[»] chr4 (3 HSPs)
chr4 (245-374)||(20298581-20298708)
chr4 (38-104)||(20300671-20300737)
chr4 (13-50)||(20300758-20300795)


Alignment Details
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 236 - 377
Target Start/End: Complemental strand, 30715296 - 30715154
Alignment:
Q  236 tgttctgcacc-aacactcattcacctatattcaaatttccatttcattctttgtaaattattcaaattaatgtagcaccaacacttcatattgatgaca 334  Q
    ||||||||||| || | ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715296 tgttctgcacccaataatcattcaccaatattcaaatttccatttcactgtttgtaaattattcaaattaatgtagcaccaacacttcatattgatgaca 30715197  T
Q  335 tgtctgatgtttagatactgatatgacaccaacccatataatt 377  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30715196 tgtctgatgtttagatactgatatgacaccaacccatataatt 30715154  T

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Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 30715719 - 30715613
Alignment:
Q  103 attacgtatgcaggtccactcgtcatgaactaagtttgtaattaaaaagtgtggctagcaatcattgatgtagttaacgtcttacaaatattgtgttgtc 202  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  30715719 attacgtatgcaggtccactcgtcatgagctaagtttgtaattaaaaagtgtggctagcaatcattgatgtagttaacgtcttacaaatattgcgtcgtc 30715620  T
Q  203 aatgctc 209  Q
    |||||||    
T  30715619 aatgctc 30715613  T

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Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 30747120 - 30747226
Alignment:
Q  103 attacgtatgcaggtccactcgtcatgaactaagtttgtaattaaaaagtgtggctagcaatcattgatgtagttaacgtcttacaaatattgtgttgtc 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  30747120 attacgtatgcaggtccactcatcatgaactaagtttgcaattaaaaagtgtggctagcaatcattgatgtagttaacgtcttacaaatattgcgtcgtc 30747219  T
Q  203 aatgctc 209  Q
    |||||||    
T  30747220 aatgctc 30747226  T

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Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 30057686 - 30057792
Alignment:
Q  103 attacgtatgcaggtccactcgtcatgaactaagtttgtaattaaaaagtgtggctagcaatcattgatgtagttaacgtcttacaaatattgtgttgtc 202  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||  ||    
T  30057686 attatgtatgcaggtccactcgtcatgaactaagtttgtaattaaaaagtgtggctagcaatcattgatgtagttaacgtattacaaatattgcgtcatc 30057785  T
Q  203 aatgctc 209  Q
    |||||||    
T  30057786 aatgctc 30057792  T

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Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 283 - 377
Target Start/End: Original strand, 30058119 - 30058213
Alignment:
Q  283 tctttgtaaattattcaaattaatgtagcaccaacacttcatattgatgacatgtctgatgtttagatactgatatgacaccaacccatataatt 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  30058119 tctttgtaaattattcaaattaatgtagcaccaacacttcatattgatgacatgtctgatgtttagatactgatataacaccaaaccatataatt 30058213  T

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Target: chr5; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 30057353 - 30057446
Alignment:
Q  11 cagagaaagcaagtgattcctgcatatagaaatttaaattagaaagtaatttggcgataagaagatgcagggaagagatacaactagcatacat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  30057353 cagagaaagcaagtgattcctgcatatagaaatttaaattagaaagtaatttggggataagaagatgcagggaagagataaaactagcatacat 30057446  T

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Target: chr5; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 30679874 - 30679781
Alignment:
Q  11 cagagaaagcaagtgattcctgcatatagaaatttaaattagaaagtaatttggcgataagaagatgcagggaagagatacaactagcatacat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  30679874 cagagaaagcaagtgattcctgcatatagaaatttaaattagaaagtaatttggggataagaagatgcagggaagagataaaactagcatacat 30679781  T

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Target: chr5; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 30746820 - 30746913
Alignment:
Q  11 cagagaaagcaagtgattcctgcatatagaaatttaaattagaaagtaatttggcgataagaagatgcagggaagagatacaactagcatacat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  30746820 cagagaaagcaagtgattcctgcatatagaaatttaaattagaaagtaatttggggataagaagatgcagggaagagataaaactagcatacat 30746913  T

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Target: chr5; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 236 - 366
Target Start/End: Original strand, 30433711 - 30433837
Alignment:
Q  236 tgttctgcacc-aacactcattcacctatattcaaatttccatttcattctttgtaaattattcaaattaatgtagcaccaacacttcatattgatgaca 334  Q
    ||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30433711 tgttctgcacccaacaatcattcaccaatattcaaatttccatttcactctttgtaaattattcaaattaatgtagcaccaacacttcatattgatgaga 30433810  T
Q  335 tgtctgatgtttagatactgatatgacaccaa 366  Q
    |     ||||||||| ||||||||||||||||    
T  30433811 t-----atgtttagacactgatatgacaccaa 30433837  T

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Target: chr5; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 30716052 - 30715959
Alignment:
Q  11 cagagaaagcaagtgattcctgcatatagaaatttaaattagaaagtaatttggcgataagaagatgcagggaagagatacaactagcatacat 104  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||    
T  30716052 cagagaaagtaagtgattcctgcatatagaaatttaaattagaaagtagtttggggataagaagatgcagggaagagataaaactagcatacat 30715959  T

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Target: chr5; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 30679554 - 30679448
Alignment:
Q  103 attacgtatgcaggtccactcgtcatgaactaagtttgtaattaaaaagtgtggctagcaatcattgatgtagttaacgtcttacaaatattgtgttgtc 202  Q
    |||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || |||    
T  30679554 attatgtatgcaagtccagtcgtcctgaactaagtttgtaattaaaaagtgtggctagcaatcattgatgtagttaacgtcttacaaaaatagcgtcgtc 30679455  T
Q  203 aatgctc 209  Q
    |||||||    
T  30679454 aatgctc 30679448  T

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Target: chr5; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 30245393 - 30245301
Alignment:
Q  13 gagaaagcaagtgattcctgcatatagaaatttaaattagaaagta--atttggcgataagaagatgcagggaagagatacaactagcataca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || ||| ||||||| ||| ||| ||||||||| ||||||||||||    
T  30245393 gagaaagcaagtgattcctgcatatagaaatttaaattagaaagtaatatatggtgataagacgatccagagaagagataaaactagcataca 30245301  T

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Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 29869947 - 29870058
Alignment:
Q  236 tgttctgcacc-aacactcattcacctatattcaaatttccatttcattctttgtaaattattcaaa-ttaatgtagcaccaacacttcatattgatgac 333  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||||   ||| ||||| ||||||| |||||| |||||||| |||||| |||||||||    
T  29869947 tgttctgcacccaacaatcattcaccaatattcaaatttccatttcaccttttctaaatcattcaaacttaatgcagcaccaaaacttcagattgatgac 29870046  T
Q  334 atgtctgatgtt 345  Q
    |||| |||||||    
T  29870047 atgtatgatgtt 29870058  T

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Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 377
Target Start/End: Complemental strand, 30244555 - 30244496
Alignment:
Q  318 acttcatattgatgacatgtctgatgtttagatactgatatgacaccaacccatataatt 377  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30244555 acttcacatcgatgacatgtctgatgtttagatactgatatgacaccaacccatataatt 30244496  T

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Target: chr5; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 40661077 - 40661164
Alignment:
Q  13 gagaaagcaagtgattcctgcatatagaaatttaaattagaaagtaatttggcgataagaagatgcagggaagagatacaactagcatac 102  Q
    ||||||||||||||||| ||||| || ||||||||||||||||||||  ||| ||||||||||||||| ||||||| | |||||||||||    
T  40661077 gagaaagcaagtgattcatgcatgtataaatttaaattagaaagtaa--tggtgataagaagatgcagagaagagacaaaactagcatac 40661164  T

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Target: chr5; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 372
Target Start/End: Original strand, 30398304 - 30398425
Alignment:
Q  236 tgttctgcacc-aacactcattcacctatattcaaatttccatttcattctttgtaaattattcaaattaatgtagcaccaacacttcatattgatgaca 334  Q
    ||||||||||| |||| ||||||||| |||||||||||||||||||| | ||||||||| ||||||||||| |||                |||||||||    
T  30398304 tgttctgcacccaacaatcattcaccaatattcaaatttccatttcactttttgtaaatcattcaaattaacgta----------------ttgatgaca 30398387  T
Q  335 tgtctgatgtttagatactgatatgacaccaacccata 372  Q
    |||||||||||||||||||||||||||||||| |||||    
T  30398388 tgtctgatgtttagatactgatatgacaccaagccata 30398425  T

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Target: chr5; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 318 - 377
Target Start/End: Original strand, 30747609 - 30747667
Alignment:
Q  318 acttcatattgatgacatgtctgatgtttagatactgatatgacaccaacccatataatt 377  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30747609 acttcacattgatgacatgtctgatgtttagatactgatatgacaccaa-ccatataatt 30747667  T

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Target: chr5; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 29851239 - 29851313
Alignment:
Q  295 attcaaattaatgtagcaccaacacttcatattgatgacatgtctgatgtttagatactgatatgacaccaaccc 369  Q
    |||||||||||  |||||||| |||| |||||||||||||||| ||||||| |||||||||||||| ||||||||    
T  29851239 attcaaattaacatagcaccagcactacatattgatgacatgtatgatgttcagatactgatatgaaaccaaccc 29851313  T

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Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 43200670 - 43200587
Alignment:
Q  13 gagaaagcaagtgattcctgcatatagaaatttaaattagaaagtaatttggcgataagaagatgcagggaagagatacaactagca 99  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||  || |||   |||||||| |||||||||  ||||||||    
T  43200670 gagaaagcaagtgattcctgcatatagaaatataaattagaaagtaatagggtgat---aagatgcatggaagagatcaaactagca 43200587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 17980776 - 17980832
Alignment:
Q  17 aagcaagtgattcctgcatatagaaatttaaattagaaagtaatttggcgataagaa 73  Q
    ||||||||||||| |||| |||||||||||||||||||| | |||||||||| ||||    
T  17980776 aagcaagtgattcatgcagatagaaatttaaattagaaacttatttggcgattagaa 17980832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 29869516 - 29869571
Alignment:
Q  154 tggctagcaatcattgatgtagttaacgtcttacaaatattgtgttgtcaatgctc 209  Q
    ||||||||||||||| ||||||||||||||||||||| |||| ||  |||||||||    
T  29869516 tggctagcaatcattaatgtagttaacgtcttacaaaaattgcgtcatcaatgctc 29869571  T

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Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 29870150 - 29870219
Alignment:
Q  295 attcaaattaatgtagcaccaacacttcatattgatgacatgtctgatgtttagatactgatatgacaccaaccc 369  Q
    ||||||| ||| |||||||||||||| ||||||| ||     ||||||||| |||||||||||||||||||||||    
T  29870150 attcaaaataacgtagcaccaacactacatattggtg-----tctgatgttcagatactgatatgacaccaaccc 29870219  T

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Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 30210785 - 30210856
Alignment:
Q  17 aagcaagtgattcctgcatatagaaatttaaattagaaagtaatttggcgataagaagatgcagggaagaga 88  Q
    |||||||||||||||||| || |||||| |||| ||||| || |  || |||||| ||||||||||||||||    
T  30210785 aagcaagtgattcctgcacatggaaattgaaatgagaaaatagtagggtgataagcagatgcagggaagaga 30210856  T

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Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 245 - 374
Target Start/End: Complemental strand, 20298708 - 20298581
Alignment:
Q  245 ccaacactcattcacctatattcaaatttccatttcattctttgtaaattattcaaattaatgtagcaccaacacttcatattgatgacatgtctgatgt 344  Q
    |||||| ||||||||| ||||||||| |||||||||| | ||||||||| ||||||||||| ||||||| || ||||||||||||||||||| |||||||    
T  20298708 ccaacaatcattcaccaatattcaaaattccatttcactttttgtaaatcattcaaattaacgtagcactaatacttcatattgatgacatgcctgatgt 20298609  T
Q  345 ttagatactgatatgacaccaacccatata 374  Q
    ||  ||||||||||||||||||||||||||    
T  20298608 tt--atactgatatgacaccaacccatata 20298581  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 20300737 - 20300671
Alignment:
Q  38 agaaatttaaattagaaagtaatttggcgataagaagatgcagggaagagatacaactagcatacat 104  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||||||    
T  20300737 agaaatttaaattcgaaagtaatatggtgataagaagatgcagggaagagataaaactagcatacat 20300671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 20300795 - 20300758
Alignment:
Q  13 gagaaagcaagtgattcctgcatatagaaatttaaatt 50  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20300795 gagaaagcaagtgattcctgcatatagaaatttaaatt 20300758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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