View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10931_low_14 (Length: 343)

Name: NF10931_low_14
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10931_low_14
NF10931_low_14
[»] chr8 (3 HSPs)
chr8 (206-284)||(29309062-29309140)
chr8 (206-262)||(26858869-26858925)
chr8 (96-143)||(29309204-29309251)
[»] chr3 (3 HSPs)
chr3 (207-281)||(16928895-16928969)
chr3 (95-143)||(5941207-5941255)
chr3 (94-138)||(14479073-14479117)
[»] chr1 (3 HSPs)
chr1 (206-283)||(10390300-10390377)
chr1 (206-298)||(24852369-24852463)
chr1 (99-143)||(10390441-10390485)
[»] chr4 (5 HSPs)
chr4 (17-94)||(16237323-16237400)
chr4 (96-143)||(12138471-12138518)
chr4 (213-285)||(13268376-13268448)
chr4 (206-243)||(12138370-12138407)
chr4 (239-285)||(30274887-30274933)
[»] scaffold0004 (1 HSPs)
scaffold0004 (206-283)||(76181-76257)
[»] chr7 (2 HSPs)
chr7 (206-280)||(2243356-2243430)
chr7 (206-290)||(37943648-37943733)
[»] scaffold0048 (1 HSPs)
scaffold0048 (206-283)||(54618-54695)
[»] chr5 (1 HSPs)
chr5 (214-285)||(14138301-14138369)
[»] chr6 (3 HSPs)
chr6 (21-94)||(16165368-16165441)
chr6 (22-94)||(20246588-20246660)
chr6 (22-94)||(22140572-22140644)
[»] scaffold0290 (1 HSPs)
scaffold0290 (213-258)||(11761-11806)
[»] scaffold0094 (1 HSPs)
scaffold0094 (213-250)||(2190-2227)
[»] chr2 (3 HSPs)
chr2 (213-250)||(18984958-18984995)
chr2 (94-143)||(44583570-44583619)
chr2 (207-283)||(23212143-23212219)


Alignment Details
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 284
Target Start/End: Complemental strand, 29309140 - 29309062
Alignment:
Q  206 gaaaatggaatattgatgatgattgagaagtagtatgagaatttaaataaaatgaagggataagtcaaaataaaataat 284  Q
    |||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||  |||||||||||||||||    
T  29309140 gaaaatggaatattgatgattattgagaagtggtatgagaatttacataaaatgaagggaggagtcaaaataaaataat 29309062  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 26858869 - 26858925
Alignment:
Q  206 gaaaatggaatattgatgatgattgagaagtagtatgagaatttaaataaaatgaag 262  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26858869 gaaaatagaatattgatgatgattgagaagtaatatgagaatttaaataaaatgaag 26858925  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 29309251 - 29309204
Alignment:
Q  96 tgtaacaccccaactttcaatttttaattaatccaatgatatttaata 143  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  29309251 tgtaacaccccaactttcaatttttaattaattcaatgatatttaata 29309204  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 16928969 - 16928895
Alignment:
Q  207 aaaatggaatattgatgatgattgagaagtagtatgagaatttaaataaaatgaagggataagtcaaaataaaat 281  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  16928969 aaaatggaatattgatgatgatttagaagtagtatgagaatttaaataaaatgaagggagaaatcaaaattaaat 16928895  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 5941207 - 5941255
Alignment:
Q  95 gtgtaacaccccaactttcaatttttaattaatccaatgatatttaata 143  Q
    ||||||||||| || |||| ||||||| ||||| |||||||||||||||    
T  5941207 gtgtaacaccctaattttctatttttagttaattcaatgatatttaata 5941255  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 14479073 - 14479117
Alignment:
Q  94 agtgtaacaccccaactttcaatttttaattaatccaatgatatt 138  Q
    ||||||||||||||||||||||||| || ||||| || |||||||    
T  14479073 agtgtaacaccccaactttcaatttctatttaattcattgatatt 14479117  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 10390377 - 10390300
Alignment:
Q  206 gaaaatggaatattgatgatgattgagaagtagtatgagaatttaaataaaatgaagggataagtcaaaataaaataa 283  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||  ||||||||||||||||    
T  10390377 gaaaatgaaatattgatgatgattgagaagtagtatgagaaattaaataaaataaagggaggagtcaaaataaaataa 10390300  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 24852369 - 24852463
Alignment:
Q  206 gaaaatggaatattgatgatgattgagaagtagtatgagaatttaaataaaatgaagggat-aagtcaaaataa-aataatagagtcagaggtgt 298  Q
    |||||| |||||||||||||||  |||||||| |||||| | ||||||||||||||| ||| ||||||| |||| ||||||||||||||||||||    
T  24852369 gaaaatagaatattgatgatgaccgagaagtaatatgaggaattaaataaaatgaagagatgaagtcaacataagaataatagagtcagaggtgt 24852463  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 10390485 - 10390441
Alignment:
Q  99 aacaccccaactttcaatttttaattaatccaatgatatttaata 143  Q
    |||||||||||||| |||||||||||||| | |||||||||||||    
T  10390485 aacaccccaacttttaatttttaattaattcgatgatatttaata 10390441  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 16237323 - 16237400
Alignment:
Q  17 caacttcacttggatagcaccaagagaatatccatcttttccttcatagttcgacaaaactatgttgtgaggcttcaa 94  Q
    ||||||||||||||||  ||||||||||| |||| ||||||||||||||||||||  |||| ||||||||||||||||    
T  16237323 caacttcacttggataataccaagagaatgtccagcttttccttcatagttcgaccgaactttgttgtgaggcttcaa 16237400  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 12138518 - 12138471
Alignment:
Q  96 tgtaacaccccaactttcaatttttaattaatccaatgatatttaata 143  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  12138518 tgtaacaccccaactttcaatttttaattaattcaatgatatttaata 12138471  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 13268448 - 13268376
Alignment:
Q  213 gaatattgatgatgattgagaagtagtatgagaatttaaataaaatgaagggataagtcaaaataaaataata 285  Q
    |||||||||||| |||||| ||||||||||||||||||||| |||| ||| ||| | |||||| |||| ||||    
T  13268448 gaatattgatgaggattgataagtagtatgagaatttaaattaaataaagagatgaatcaaaacaaaaaaata 13268376  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 12138407 - 12138370
Alignment:
Q  206 gaaaatggaatattgatgatgattgagaagtagtatga 243  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  12138407 gaaaatgaaatattgatgatgattgagaagtagtatga 12138370  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 30274887 - 30274933
Alignment:
Q  239 tatgagaatttaaataaaatgaagggataagtcaaaataaaataata 285  Q
    ||||||| |||||||||||||||||||  | ||||||||||||||||    
T  30274887 tatgagagtttaaataaaatgaagggaggaatcaaaataaaataata 30274933  T

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Target: scaffold0004 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 76257 - 76181
Alignment:
Q  206 gaaaatggaatattgatgatgattgagaagtagtatgagaatttaaataaaatgaagggataagtcaaaataaaataa 283  Q
    ||||||||||||||||||||||||||| | ||  ||||||||| || ||||||||||||| |||||||||||||||||    
T  76257 gaaaatggaatattgatgatgattgaggaataa-atgagaattcaattaaaatgaagggagaagtcaaaataaaataa 76181  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 2243430 - 2243356
Alignment:
Q  206 gaaaatggaatattgatgatgattgagaagtagtatgagaatttaaataaaatgaagggataagtcaaaataaaa 280  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||||| |||||||| ||  | |||||||||||    
T  2243430 gaaaatagaatattgatgatgattgtaaagtagtatgagaatttaaatgaaatgaagagaggattcaaaataaaa 2243356  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 37943648 - 37943733
Alignment:
Q  206 gaaaatggaatattgatgatgattgagaagtagtatgagaatttaaataaaatgaagggataagtcaaaataa-aataatagagtc 290  Q
    |||||| ||||||||||||||| |||||||||||||||| | ||||||||||||||| ||| | |||| |||| ||||||| ||||    
T  37943648 gaaaatagaatattgatgatgactgagaagtagtatgaggaattaaataaaatgaagagatgaatcaacataagaataatatagtc 37943733  T

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Target: scaffold0048 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 54695 - 54618
Alignment:
Q  206 gaaaatggaatattgatgatgattgagaagtagtatgagaatttaaataaaatgaagggataagtcaaaataaaataa 283  Q
    ||||||||| || |||||||||||||| | || || |||||||||| |||||||||||||  ||||||||||||||||    
T  54695 gaaaatggagtactgatgatgattgaggaataataggagaatttaattaaaatgaagggagcagtcaaaataaaataa 54618  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 14138369 - 14138301
Alignment:
Q  214 aatattgatgatgattgagaagtagtatgagaatttaaataaaatgaagggataagtcaaaataaaataata 285  Q
    ||||||||||||||||   ||||||||| |||||||||||||||||||||||  || |||||||||||||||    
T  14138369 aatattgatgatgatt---aagtagtattagaatttaaataaaatgaagggaggagccaaaataaaataata 14138301  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 16165368 - 16165441
Alignment:
Q  21 ttcacttggatagcaccaagagaatatccatcttttccttcatagttcgacaaaactatgttgtgaggcttcaa 94  Q
    |||||||| | ||||||||||||| ||||| |||| |||||||||||  ||| ||||||||||||||| |||||    
T  16165368 ttcacttgaagagcaccaagagaaaatccagctttcccttcatagtttaacataactatgttgtgaggtttcaa 16165441  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 20246588 - 20246660
Alignment:
Q  22 tcacttggatagcaccaagagaatatccatcttttccttcatagttcgacaaaactatgttgtgaggcttcaa 94  Q
    ||||||||| ||||||||| ||||  ||||| ||||||||||| || ||||||| ||  || |||||||||||    
T  20246588 tcacttggagagcaccaagggaatgaccatcctttccttcataatttgacaaaattacattatgaggcttcaa 20246660  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 22140572 - 22140644
Alignment:
Q  22 tcacttggatagcaccaagagaatatccatcttttccttcatagttcgacaaaactatgttgtgaggcttcaa 94  Q
    ||||||||| ||||||||| ||||  ||||| ||||||||||| || ||||||| ||  || |||||||||||    
T  22140572 tcacttggagagcaccaagggaatgaccatcctttccttcataatttgacaaaattacattatgaggcttcaa 22140644  T

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Target: scaffold0290 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 11761 - 11806
Alignment:
Q  213 gaatattgatgatgattgagaagtagtatgagaatttaaataaaat 258  Q
    |||||||||||| ||||||  |||||||||||||||||||| ||||    
T  11761 gaatattgatgaggattgatcagtagtatgagaatttaaattaaat 11806  T

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Target: scaffold0094 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 2190 - 2227
Alignment:
Q  213 gaatattgatgatgattgagaagtagtatgagaattta 250  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  2190 gaatattgatgatgattgataagtagtacgagaattta 2227  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 18984958 - 18984995
Alignment:
Q  213 gaatattgatgatgattgagaagtagtatgagaattta 250  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  18984958 gaatattgatgaggattgataagtagtatgagaattta 18984995  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 44583570 - 44583619
Alignment:
Q  94 agtgtaacaccccaactttcaatttttaattaatccaatgatatttaata 143  Q
    |||||||||||| || |||| ||||||||||||| ||||||| |||||||    
T  44583570 agtgtaacaccctaattttctatttttaattaattcaatgatgtttaata 44583619  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 23212219 - 23212143
Alignment:
Q  207 aaaatggaatattgatgatgattgagaagtagtatgagaatttaaataaaatgaagggataagtcaaaataaaataa 283  Q
    |||||||||||||||| ||| | ||| | || |  |||||||||| || ||||||||||  ||||||||||||||||    
T  23212219 aaaatggaatattgataatgctcgaggaataatgcgagaatttaattataatgaagggaggagtcaaaataaaataa 23212143  T

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