View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10931_low_17 (Length: 305)
Name: NF10931_low_17
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10931_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 7662358 - 7662524
Alignment:
| Q |
13 |
agactggagttactctagacccaggaggatttgtggtgttgcctgctatgtgaaggccactaaaaaagaagtcatttgcctcaacaagtttaggatcctt |
112 |
Q |
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| T |
7662358 |
agactggagttactctagacccagtaggatttgtggtgttgcctgctatgtgaaggacactaaaaaagaagtcatttgcctcaacaagtttaggatcctt |
7662457 |
T |
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| Q |
113 |
gcatactgaattccctaaaattgtcacgcaataatcttggagagtactagcatcagctgcaaagaca |
179 |
Q |
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| T |
7662458 |
gcatactgaattccctaaaattgtcacgcaataatcttggagagtactagcatcagctgcaaagaca |
7662524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 178 - 290
Target Start/End: Original strand, 7662572 - 7662684
Alignment:
| Q |
178 |
catttgataaaaactttgaaacttgaaagctctagtagatttttgagacaggaattgtagtattggttgatgaatattggtattgtatcaaggcctgttt |
277 |
Q |
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| T |
7662572 |
catttgataaaaactttgaaacttgaaagctctagtagatttttgagacaggaattgtagtattggttgatgaatattggtattgtatcaaggcctgttt |
7662671 |
T |
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| Q |
278 |
atatgaaatttgt |
290 |
Q |
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| T |
7662672 |
atatgaaatttgt |
7662684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 11672261 - 11672378
Alignment:
| Q |
13 |
agactggagttactctagacccaggaggatttgtggtgttgcctgctatgtgaaggccactaaaaaagaagtcatttgcctcaacaagtttaggatcctt |
112 |
Q |
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|||||||||||||| | ||||||| || ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11672261 |
agactggagttacttttgacccagcagcattagtagtgttgcctgctatgtgaaggccactaaagaagaagtcatttgcctcaacaagtttaggatcctt |
11672360 |
T |
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| Q |
113 |
gcatactgaattccctaa |
130 |
Q |
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||||| |||||||||||| |
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| T |
11672361 |
gcataatgaattccctaa |
11672378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 11720382 - 11720517
Alignment:
| Q |
4 |
gagaagcagagactggagttactctagacccaggaggatttgtggtgttgcctgctatgtgaaggccactaaaaaagaagtcatttgcctcaacaagttt |
103 |
Q |
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|||| ||| |||||||||||||||| ||||||| ||| || || |||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
11720382 |
gagatgcaaagactggagttactcttgacccagcagggttagtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaacaagttt |
11720481 |
T |
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| Q |
104 |
aggatccttgcatactgaattccctaaaattgtcac |
139 |
Q |
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| T |
11720482 |
tggatccttgcataatgaattccctaacattgtcac |
11720517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 11681142 - 11681277
Alignment:
| Q |
4 |
gagaagcagagactggagttactctagacccaggaggatttgtggtgttgcctgctatgtgaaggccactaaaaaagaagtcatttgcctcaacaagttt |
103 |
Q |
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|||| ||| |||||||||| ||||| |||||| | ||| || ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
11681142 |
gagatgcaaagactggagtcactcttgacccaacaacattagtagtgttgcctgctatgtgaaggccactaaaaaggaaatcatttgcctcaacaagttt |
11681241 |
T |
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| Q |
104 |
aggatccttgcatactgaattccctaaaattgtcac |
139 |
Q |
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| T |
11681242 |
tggatccttgcatactgaattccctaacattgtcac |
11681277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 11729505 - 11729628
Alignment:
| Q |
13 |
agactggagttactctagacccaggaggatttgtggtgttgcctgctatgtgaaggccactaaaaaagaagtcatttgcctcaacaagtttaggatcctt |
112 |
Q |
| |
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|||||||||| |||||||||||| || ||||| |||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| |
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| T |
11729505 |
agactggagtcactctagacccaactgggtttgtagtgttgccagctatgtgaaggccactaaaaaggaaatcatttgcctcaacaagttttggatcctt |
11729604 |
T |
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| Q |
113 |
gcatactgaattccctaaaattgt |
136 |
Q |
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|||||||||||||||||| ||||| |
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| T |
11729605 |
gcatactgaattccctaacattgt |
11729628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 11693597 - 11693471
Alignment:
| Q |
4 |
gagaagcagagactggagttactctagacccaggaggatttgtggtgttgcctgctatgtgaaggccactaaaaaagaagtcatttgcctcaacaagttt |
103 |
Q |
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|||| ||| |||||||||| ||||| |||||| || ||| || ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
11693597 |
gagatgcaaagactggagtcactcttgacccaacagcattagtagtgttgcctgctatgtgaaggccactaaaaaggaaatcatttgcctcaacaagttt |
11693498 |
T |
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| Q |
104 |
aggatccttgcatactgaattccctaa |
130 |
Q |
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|||||||||||||||||||||||||| |
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| T |
11693497 |
tggatccttgcatactgaattccctaa |
11693471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 11672524 - 11672570
Alignment:
| Q |
133 |
ttgtcacgcaataatcttggagagtactagcatcagctgcaaagaca |
179 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
11672524 |
ttgtcacgcaaaaatcttggagagtagtagcatcagctgcaaagaca |
11672570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 11712602 - 11712559
Alignment:
| Q |
96 |
acaagtttaggatccttgcatactgaattccctaaaattgtcac |
139 |
Q |
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|||||||||||||||||||||| ||||||||| || |||||||| |
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| T |
11712602 |
acaagtttaggatccttgcataatgaattcccaaacattgtcac |
11712559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 11729899 - 11729945
Alignment:
| Q |
133 |
ttgtcacgcaataatcttggagagtactagcatcagctgcaaagaca |
179 |
Q |
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|||| |||||| |||||||||||||| |||||||| ||||||||||| |
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| T |
11729899 |
ttgtgacgcaaaaatcttggagagtagtagcatcatctgcaaagaca |
11729945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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