View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10931_low_18 (Length: 292)
Name: NF10931_low_18
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10931_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 51355804 - 51355563
Alignment:
| Q |
18 |
cacgtgcagccactccaggggaaccatgagaaattgcaacgattccaatggaatccggaccaggctacaaaacattca-------------acatgagat |
104 |
Q |
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| T |
51355804 |
cacgtgcagccactccaggggaaccatgagaaattgcaacgattccaatggaatccggaccaggcta---aacattcatcacaatatcataacatgagat |
51355708 |
T |
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| Q |
105 |
caacatttacatcacataattaggaaaaggaaatataagagtgttgttttatgttgttcttagccaaaagtcttaagtaagacaatgttttgataaatat |
204 |
Q |
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| T |
51355707 |
caacatttacatcacataattaggaaaagaaaatataagagtgttgttttatgttgttcttagccaaaagtcttaagtaagacaatgttttgataaatat |
51355608 |
T |
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| Q |
205 |
aagaacaagaaaaattacatcacataaggaaaagagtataaaggt |
249 |
Q |
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| T |
51355607 |
aagaacaagaaaaattacatcacataaggaaaagagtataaaggt |
51355563 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 4338175 - 4338131
Alignment:
| Q |
39 |
aaccatgagaaattgcaacgattccaatggaatccggaccaggct |
83 |
Q |
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| T |
4338175 |
aaccatgagaaatagcgacgattccaatggaatccggaccaggct |
4338131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 43510050 - 43510107
Alignment:
| Q |
26 |
gccactccaggggaaccatgagaaattgcaacgattccaatggaatccggaccaggct |
83 |
Q |
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| T |
43510050 |
gccacaccatggcaaccatgagaaatcgcaatgattccaatagattccggaccaggct |
43510107 |
T |
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