View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10931_low_2 (Length: 850)

Name: NF10931_low_2
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10931_low_2
NF10931_low_2
[»] chr4 (15 HSPs)
chr4 (18-831)||(1746978-1747791)
chr4 (552-592)||(8423740-8423780)
chr4 (517-602)||(35723373-35723457)
chr4 (552-602)||(903909-903959)
chr4 (511-571)||(44132627-44132685)
chr4 (641-829)||(6005818-6006005)
chr4 (554-594)||(23861455-23861495)
chr4 (519-590)||(38148716-38148785)
chr4 (552-596)||(40613443-40613487)
chr4 (552-602)||(13783268-13783318)
chr4 (552-610)||(20743300-20743358)
chr4 (552-590)||(22440622-22440660)
chr4 (552-602)||(36635311-36635361)
chr4 (547-588)||(30522932-30522973)
chr4 (554-602)||(34200295-34200341)
[»] chr7 (20 HSPs)
chr7 (519-602)||(32308107-32308188)
chr7 (518-596)||(19206043-19206119)
chr7 (528-602)||(20549778-20549850)
chr7 (511-602)||(6630895-6630984)
chr7 (552-596)||(29787391-29787435)
chr7 (518-591)||(30731035-30731104)
chr7 (525-591)||(5548674-5548738)
chr7 (553-602)||(11722121-11722170)
chr7 (528-602)||(9482921-9482993)
chr7 (532-602)||(22868029-22868097)
chr7 (552-591)||(23191894-23191933)
chr7 (556-602)||(11061102-11061148)
chr7 (552-590)||(26733303-26733341)
chr7 (552-602)||(27945028-27945078)
chr7 (552-590)||(32287485-32287523)
chr7 (525-601)||(22602707-22602781)
chr7 (512-596)||(24339635-24339717)
chr7 (555-596)||(28155563-28155604)
chr7 (513-581)||(35297657-35297723)
chr7 (524-596)||(49107814-49107883)
[»] chr1 (36 HSPs)
chr1 (517-594)||(34371709-34371783)
chr1 (512-591)||(25361884-25361961)
chr1 (552-602)||(2896143-2896193)
chr1 (519-596)||(17754304-17754379)
chr1 (552-602)||(36878448-36878498)
chr1 (525-596)||(9828037-9828106)
chr1 (552-596)||(10233246-10233290)
chr1 (552-596)||(10474999-10475043)
chr1 (552-596)||(34298429-34298473)
chr1 (518-604)||(10572579-10572663)
chr1 (552-603)||(27471588-27471639)
chr1 (552-602)||(398787-398837)
chr1 (525-582)||(7918208-7918263)
chr1 (552-602)||(17831553-17831603)
chr1 (552-602)||(38503307-38503357)
chr1 (552-602)||(40285676-40285726)
chr1 (512-585)||(44482234-44482305)
chr1 (552-601)||(20157372-20157421)
chr1 (553-602)||(36905984-36906033)
chr1 (554-602)||(6427337-6427385)
chr1 (552-596)||(12443482-12443526)
chr1 (552-596)||(21378571-21378615)
chr1 (552-592)||(26238134-26238174)
chr1 (552-620)||(31672917-31672985)
chr1 (525-596)||(34712380-34712449)
chr1 (554-605)||(1262868-1262919)
chr1 (552-591)||(25098577-25098616)
chr1 (552-594)||(1864902-1864944)
chr1 (552-602)||(5376522-5376572)
chr1 (548-602)||(6415019-6415073)
chr1 (552-602)||(16812530-16812580)
chr1 (554-600)||(17425117-17425163)
chr1 (552-594)||(40181866-40181908)
chr1 (546-596)||(42325553-42325603)
chr1 (555-588)||(9709821-9709854)
chr1 (552-605)||(19562643-19562696)
[»] chr6 (17 HSPs)
chr6 (512-604)||(10339109-10339200)
chr6 (528-605)||(19040336-19040411)
chr6 (512-605)||(26562673-26562764)
chr6 (528-602)||(7265593-7265665)
chr6 (525-602)||(9027165-9027240)
chr6 (552-602)||(9658866-9658916)
chr6 (554-596)||(30866168-30866210)
chr6 (518-590)||(5000616-5000686)
chr6 (525-589)||(9025491-9025553)
chr6 (511-602)||(16766684-16766773)
chr6 (552-595)||(31579247-31579290)
chr6 (554-596)||(7377972-7378014)
chr6 (553-607)||(7801179-7801233)
chr6 (554-596)||(9629376-9629418)
chr6 (558-596)||(20371138-20371176)
chr6 (552-601)||(17341686-17341735)
chr6 (552-589)||(32511688-32511725)
[»] chr2 (15 HSPs)
chr2 (519-594)||(44860315-44860388)
chr2 (552-602)||(23718013-23718063)
chr2 (552-602)||(24105685-24105735)
chr2 (530-602)||(31808064-31808134)
chr2 (552-596)||(21616755-21616799)
chr2 (512-590)||(18889575-18889651)
chr2 (552-603)||(21782840-21782891)
chr2 (552-591)||(37411266-37411305)
chr2 (557-602)||(31284035-31284080)
chr2 (552-596)||(42832298-42832342)
chr2 (552-591)||(18276519-18276558)
chr2 (552-591)||(28677907-28677946)
chr2 (552-594)||(1327973-1328015)
chr2 (552-602)||(21091710-21091760)
chr2 (552-620)||(24894357-24894426)
[»] chr8 (11 HSPs)
chr8 (518-596)||(24362192-24362268)
chr8 (552-595)||(4611528-4611571)
chr8 (518-591)||(11927076-11927147)
chr8 (552-590)||(34897084-34897122)
chr8 (552-589)||(18067956-18067993)
chr8 (556-596)||(39954305-39954345)
chr8 (512-602)||(15816113-15816201)
chr8 (528-602)||(31109518-31109590)
chr8 (554-596)||(31236601-31236643)
chr8 (528-596)||(13844596-13844662)
chr8 (518-594)||(25566836-25566910)
[»] chr3 (17 HSPs)
chr3 (548-623)||(8412963-8413038)
chr3 (528-594)||(7928445-7928509)
chr3 (552-602)||(1438791-1438841)
chr3 (525-594)||(11313797-11313864)
chr3 (552-601)||(10690284-10690333)
chr3 (552-604)||(4987313-4987365)
chr3 (517-588)||(8039824-8039893)
chr3 (552-596)||(8383250-8383294)
chr3 (523-602)||(11665931-11666008)
chr3 (552-596)||(16192772-16192816)
chr3 (527-602)||(26290358-26290431)
chr3 (528-586)||(49505154-49505210)
chr3 (554-596)||(5407271-5407313)
chr3 (555-596)||(8789575-8789616)
chr3 (552-605)||(10954936-10954989)
chr3 (552-605)||(32429402-32429455)
chr3 (552-589)||(34307802-34307839)
[»] scaffold1528 (1 HSPs)
scaffold1528 (519-596)||(1028-1103)
[»] chr5 (15 HSPs)
chr5 (511-591)||(3966501-3966579)
chr5 (554-620)||(30098295-30098361)
chr5 (554-630)||(19737506-19737582)
chr5 (552-596)||(28588696-28588740)
chr5 (515-594)||(32766930-32767007)
chr5 (552-591)||(27932233-27932272)
chr5 (512-602)||(39698528-39698616)
chr5 (552-594)||(6471911-6471953)
chr5 (556-602)||(7175045-7175091)
chr5 (552-602)||(19438330-19438380)
chr5 (556-602)||(27144450-27144496)
chr5 (557-602)||(17123035-17123080)
chr5 (528-588)||(30502388-30502446)
chr5 (528-588)||(30542731-30542789)
chr5 (524-588)||(36838544-36838606)
[»] scaffold0020 (1 HSPs)
scaffold0020 (525-596)||(135309-135378)
[»] scaffold0036 (1 HSPs)
scaffold0036 (518-591)||(9737-9808)
[»] scaffold0004 (1 HSPs)
scaffold0004 (552-602)||(92794-92844)
[»] scaffold0123 (1 HSPs)
scaffold0123 (519-589)||(44516-44584)
[»] scaffold0008 (1 HSPs)
scaffold0008 (518-588)||(263362-263430)
[»] scaffold0306 (1 HSPs)
scaffold0306 (552-602)||(13387-13437)
[»] scaffold0152 (1 HSPs)
scaffold0152 (552-602)||(21890-21940)
[»] scaffold0103 (1 HSPs)
scaffold0103 (552-602)||(51798-51848)
[»] scaffold0223 (1 HSPs)
scaffold0223 (520-596)||(20165-20239)
[»] scaffold0024 (1 HSPs)
scaffold0024 (511-587)||(68225-68299)


Alignment Details
Target: chr4 (Bit Score: 671; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 18 - 831
Target Start/End: Complemental strand, 1747791 - 1746978
Alignment:
Q  18 cagttatcagatgagtgctgggctaatgtcatcgaattcctcatcgacgatgacgacaacaactccttgaaggttctctccctcgtctcaaaacagttac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  1747791 cagttatcagatgagtgctgggctaatgtcatcgaattcctcatcgacgatgacgacaacaactccttgaaggttctctccctcatctcaaagcagttac 1747692  T
Q  118 tctccctaaccaactgtcacaaattctctctttcaatctcaaaccaaaccctaccttacttcccacgtctcttccagcgtttccccaacatcgcctgcct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  1747691 tctccctaaccaactgtcacaaattctctctttcaatctcaaaccaaaccctaccttacctcccacgtctcttccagcgtttccccaatatcgcctgcct 1747592  T
Q  218 taacctcacacgcttccgcggtaacctcaaccacctcaaccggcttctcctcctaatctccactttccgattgcacctcaaattgctcaacctatccaac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1747591 taacctcacacgcttccgcggtaacctcaaccacctcaaccggcttctcctcctaatctccactttccgattgcacctcaaattgctcaacctatccaac 1747492  T
Q  318 caatccacttttcctgcaaagggattgcgagctttgtccaaagagattaagatcacaatgtttacccctctcacttgttccaactttgaccactctctcc 417  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1747491 caatccacttttccagcaaagggattgcgagctttgtccaaagagattaagattacaatgtttacccctctcacttgttccaactttgaccactctctcc 1747392  T
Q  418 ataaaaacgacctagttgttagctacgactacgatgacttcccttccttgaagaggttgacctgcaacactccttagattaagcgtgtccccatgtgttc 517  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  1747391 ataaaaacgacctagttgttagccacgactacaatgacttccctcccttgaagaggttgacctacaacactccttagattaggcgtgtccccatgtgttc 1747292  T
Q  518 gacaccaacacgacactgacacataaaat--------gttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttcggtgt 609  Q
    ||||||||||||||||||||||||| |||         |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  1747291 gacaccaacacgacactgacacatataataacgtataattaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgctcggtgt 1747192  T
Q  610 ccttgcttcattgattgaaactagnnnnnnnctttgaaaatgccaacttagattttctgtatttgattattactctatgcaccataatttcctagtaatc 709  Q
    ||||||||||||||||||||||||       |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  1747191 ccttgcttcattgattgaaactagtttttttctttgaaaatgccaactta--------gtatttgattattactctatgcaccataatttcctagtaatc 1747100  T
Q  710 ttgtatgttaagatttttatataatgtgcaatataatgcaattagttatgtgttatacaaagttataaattacattgtttttctttgctttcccttgaat 809  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1747099 ttgtatggtaagatttttatataaggtgcaatataatgcaattagttatgtgttatacaaagttataaattacattgtttttctttgctttcccttgaat 1747000  T
Q  810 tgcatcatctggatttgattat 831  Q
    || |||||||||||||||||||    
T  1746999 tgtatcatctggatttgattat 1746978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 592
Target Start/End: Original strand, 8423740 - 8423780
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggt 592  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  8423740 actgaattatgtgattttctcaaattattagcggtgtcggt 8423780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 517 - 602
Target Start/End: Original strand, 35723373 - 35723457
Alignment:
Q  517 cgacaccaacacgacactgacacataaaatgttaaactgaattatgtg-attttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||| | |||||||||||||||| |||  || | ||||||||||| |||||||||| |||||||||||||||| |||| |||||    
T  35723373 cgacaccgatacgacactgacacatataat--tacattgaattatgtgtattttctcaaattattagcggtgtcggcgtgtcagtgt 35723457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 903959 - 903909
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||||||||||||||| |||||| ||||| |||||||| |||||    
T  903959 actgaattatgtgattttctcaaattattaacggtgccggtgtgtcagtgt 903909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 511 - 571
Target Start/End: Original strand, 44132627 - 44132685
Alignment:
Q  511 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttct 571  Q
    ||||||||||||||||||||||| |||||||| ||  ||| ||||||||| ||||||||||    
T  44132627 tgtgttcgacaccaacacgacaccgacacatataa--ttatactgaattacgtgattttct 44132685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 641 - 829
Target Start/End: Complemental strand, 6006005 - 6005818
Alignment:
Q  641 ctttgaaaatgccaacttagattttctgtatttgattattactctatgcaccataatttcctagtaatcttgtatgttaagatttttatataatgtgcaa 740  Q
    ||||||||||| ||||||||||||  ||||| || || | || || |||| ||||||| || | ||||  |||||| ||| || |||||||||||  |||    
T  6006005 ctttgaaaatgtcaacttagatttgttgtatatgtttgtcaccctgtgcatcataattgccaattaattgtgtatggtaacatatttatataatgcacaa 6005906  T
Q  741 tataatgcaattagttatgtgttatacaaagttataaattacattgtttttctttgctttcccttgaattgcatcatctggatttgatt 829  Q
    | ||||  ||  ||||  ||||||||||  ||| ||||||| || | |||||||  ||||||||||||||  |||||||||| ||||||    
T  6005905 tgtaatataacaagttgggtgttatacatcgttttaaattatatag-ttttcttcactttcccttgaattatatcatctggacttgatt 6005818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 554 - 594
Target Start/End: Original strand, 23861455 - 23861495
Alignment:
Q  554 tgaattatgtgattttctcaatttattagcggtgtcggtgt 594  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  23861455 tgaatcatgtgattttatcaatttattagcggtgtcggtgt 23861495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 519 - 590
Target Start/End: Original strand, 38148716 - 38148785
Alignment:
Q  519 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcg 590  Q
    ||||||||||||||  ||||  ||||||  || |||||||||||||||||||||||  ||||||||||||||    
T  38148716 acaccaacacgacatcgacatttaaaat--tacactgaattatgtgattttctcaaactattagcggtgtcg 38148785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 552 - 596
Target Start/End: Complemental strand, 40613487 - 40613443
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    |||||||||||||||||||||||  ||||||||||||||| ||||    
T  40613487 actgaattatgtgattttctcaaaatattagcggtgtcggcgtgt 40613443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 13783318 - 13783268
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||| |||||| ||||||| | ||||||||||||||||||| |||||    
T  13783318 actgaattttgtgatcttctcaaataattagcggtgtcggtgtgtcagtgt 13783268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 610
Target Start/End: Original strand, 20743300 - 20743358
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttcggtgtc 610  Q
    |||||||||||| |||||||||| |||||| | ||||||| |||| |||||||| ||||    
T  20743300 actgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgttcgatgtc 20743358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 590
Target Start/End: Original strand, 22440622 - 22440660
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcg 590  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  22440622 actgaattatgtgattttctcaaattattaacggtgtcg 22440660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 36635361 - 36635311
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||||||||||||||| ||||||| ||||| || |||| |||||    
T  36635361 actgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgt 36635311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 588
Target Start/End: Original strand, 30522932 - 30522973
Alignment:
Q  547 gttaaactgaattatgtgattttctcaatttattagcggtgt 588  Q
    |||| ||||||||||||||||||||||| | |||||||||||    
T  30522932 gttacactgaattatgtgattttctcaaataattagcggtgt 30522973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 602
Target Start/End: Original strand, 34200295 - 34200341
Alignment:
Q  554 tgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||||||||||||| |||||||||  |||| |||||||||||    
T  34200295 tgaattatgtgattttctcaaattattagcg--gtcgatgtgtaagtgt 34200341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 519 - 602
Target Start/End: Complemental strand, 32308188 - 32308107
Alignment:
Q  519 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||| |||||||||||||||||| |||  || ||||||||||||||||||||||| |||||||||||||||| |||| |||||    
T  32308188 acaccgacacgacactgacacatacaat--tacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 32308107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 596
Target Start/End: Complemental strand, 19206119 - 19206043
Alignment:
Q  518 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    |||||||||| ||||| |||||||| |||  |||  ||||||||||||||||||||| |||||||||||||||| ||||    
T  19206119 gacaccaacaagacaccgacacatataattataa--tgaattatgtgattttctcaaattattagcggtgtcggcgtgt 19206043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 528 - 602
Target Start/End: Complemental strand, 20549850 - 20549778
Alignment:
Q  528 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||| |||||||| |||  || ||||||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  20549850 cgacaccgacacatataat--tacactgaattacgtgattttctcaaattattagcggtgtcggtgtgtcagtgt 20549778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 511 - 602
Target Start/End: Original strand, 6630895 - 6630984
Alignment:
Q  511 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||| ||||||||||||||||  |||||||| ||  ||| ||||||||| |||| |||||||| ||||||| |||||||| |||| |||||    
T  6630895 tgtgtccgacaccaacacgacatcgacacatataa--ttacactgaattaagtgactttctcaaattattagtggtgtcggcgtgtcagtgt 6630984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 596
Target Start/End: Original strand, 29787391 - 29787435
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||    
T  29787391 actgaattatgtgattttctcaaattattagcggtgtcggcgtgt 29787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 591
Target Start/End: Complemental strand, 30731104 - 30731035
Alignment:
Q  518 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcgg 591  Q
    |||||||||||||||| |||||| ||    ||| ||||||||||||||||||||||| ||||| ||||||||||    
T  30731104 gacaccaacacgacaccgacacacaa----ttacactgaattatgtgattttctcaaattattcgcggtgtcgg 30731035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 525 - 591
Target Start/End: Complemental strand, 5548738 - 5548674
Alignment:
Q  525 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcgg 591  Q
    |||||||||||||||||| |||  || |||||||||| |||||||||||| |||| |||||||||||    
T  5548738 acacgacactgacacatataat--tacactgaattatttgattttctcaaattatcagcggtgtcgg 5548674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 602
Target Start/End: Original strand, 11722121 - 11722170
Alignment:
Q  553 ctgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||||||||||||| || ||||||||||||| |||| |||||    
T  11722121 ctgaattatgtgattttctcaaattgttagcggtgtcggcgtgtcagtgt 11722170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 602
Target Start/End: Complemental strand, 9482993 - 9482921
Alignment:
Q  528 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||| |||||||| |||  || |||||||| |||||||||||||| |||| |||| ||||||||||| |||||    
T  9482993 cgacaccgacacatataat--tacactgaattgtgtgattttctcaaattatcagcgatgtcggtgtgtcagtgt 9482921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 602
Target Start/End: Complemental strand, 22868097 - 22868029
Alignment:
Q  532 actgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||| |||  || ||||||||||||||||||||||  ||||||| |||||||| |||| |||||    
T  22868097 actgacacatataat--tacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgt 22868029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 591
Target Start/End: Complemental strand, 23191933 - 23191894
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcgg 591  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  23191933 actgaaatatgtgattttctcaaattattagcggtgtcgg 23191894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 556 - 602
Target Start/End: Original strand, 11061102 - 11061148
Alignment:
Q  556 aattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||||| |||| |||||||| |||||||||||| |||||    
T  11061102 aattatgtgattttttcaaattattagctgtgtcggtgtgtcagtgt 11061148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 590
Target Start/End: Complemental strand, 26733341 - 26733303
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcg 590  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  26733341 actgaattatgtgattttgtcaaattattagcggtgtcg 26733303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 27945078 - 27945028
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||| |||||||||| ||||||| |||||||| |||| |||||    
T  27945078 actgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgt 27945028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 590
Target Start/End: Original strand, 32287485 - 32287523
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcg 590  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  32287485 actgaattatgtgattttctcagattattagcggtgtcg 32287523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 601
Target Start/End: Original strand, 22602707 - 22602781
Alignment:
Q  525 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtg 601  Q
    ||||||||| |||||||| |||  || ||||||||||||||||||||||| | |||  ||||||||| |||| ||||    
T  22602707 acacgacaccgacacatataat--tacactgaattatgtgattttctcaaataatttacggtgtcggcgtgtcagtg 22602781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 596
Target Start/End: Complemental strand, 24339717 - 24339635
Alignment:
Q  512 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    |||| ||||||| ||||||||| ||||| |  |||  || |||||||||||||||||| |||| |||||||| ||||||| ||||    
T  24339717 gtgtccgacaccgacacgacaccgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtcggcgtgt 24339635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 596
Target Start/End: Complemental strand, 28155604 - 28155563
Alignment:
Q  555 gaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||| |||||||||| |||||||||||||||| ||||    
T  28155604 gaattatgtaattttctcaaattattagcggtgtcggcgtgt 28155563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 581
Target Start/End: Original strand, 35297657 - 35297723
Alignment:
Q  513 tgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttatta 581  Q
    ||||||||| |||||||||||  ||||||| |||  |||  ||||||||||||||||||||| ||||||    
T  35297657 tgttcgacatcaacacgacaccaacacatataattataa--tgaattatgtgattttctcaaattatta 35297723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 596
Target Start/End: Complemental strand, 49107883 - 49107814
Alignment:
Q  524 aacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    |||||||||| |||||||| |||   | ||| ||||||||| ||||||||| |||||||||||||||||||||    
T  49107883 aacacgacaccgacacatataatc--acactcaattatgtg-ttttctcaaattattagcggtgtcggtgtgt 49107814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 517 - 594
Target Start/End: Complemental strand, 34371783 - 34371709
Alignment:
Q  517 cgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgt 594  Q
    ||||||||||||||||| |||||||| |||  || ||||||||||||||||||||||| |||||||||||||| ||||    
T  34371783 cgacaccaacacgacaccgacacatataat--tacactgaattatgtgattttctcaa-ttattagcggtgtcagtgt 34371709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 512 - 591
Target Start/End: Complemental strand, 25361961 - 25361884
Alignment:
Q  512 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcgg 591  Q
    |||| ||||||| |||||||||||||||||| |||  || ||||||||||||||||||||||| |||| || ||||||||    
T  25361961 gtgtccgacaccgacacgacactgacacatataat--tacactgaattatgtgattttctcaaattatcagtggtgtcgg 25361884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 602
Target Start/End: Original strand, 2896143 - 2896193
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| |||||    
T  2896143 actgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 2896193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 519 - 596
Target Start/End: Complemental strand, 17754379 - 17754304
Alignment:
Q  519 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||| |||| ||||||||||||| |  |||| |||||||||||| ||||| |||| |||||||||||||||||||||    
T  17754379 acaccgacaccacactgacacatata--gttacactgaattatgtaattttttcaaattattagcggtgtcggtgtgt 17754304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 36878498 - 36878448
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| |||||    
T  36878498 actgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 36878448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 596
Target Start/End: Complemental strand, 9828106 - 9828037
Alignment:
Q  525 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||| ||||||||||||  || |||||||||||||||||| |||| ||||||| |||||||| ||||    
T  9828106 acacgacaccgacacataaaat--tacactgaattatgtgattttatcaaattattagtggtgtcggcgtgt 9828037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 596
Target Start/End: Complemental strand, 10233290 - 10233246
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||    
T  10233290 actgaattatgtgattttctcaatttattagtggtgttggtgtgt 10233246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 596
Target Start/End: Original strand, 10474999 - 10475043
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||    
T  10474999 actgaattatgtgattttctcaagttattagcggtgtcggcgtgt 10475043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 596
Target Start/End: Complemental strand, 34298473 - 34298429
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||    
T  34298473 actgaattatgtgattttctcaaattattagtggtgtcggtgtgt 34298429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 518 - 604
Target Start/End: Original strand, 10572579 - 10572663
Alignment:
Q  518 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttc 604  Q
    ||||||||||| |||| |||||||  |||  || || |||||||||||||||||||| ||||||| |||||||| |||| |||||||    
T  10572579 gacaccaacacaacaccgacacatttaat--tacaccgaattatgtgattttctcaaattattagtggtgtcggcgtgtcagtgttc 10572663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 552 - 603
Target Start/End: Original strand, 27471588 - 27471639
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgtt 603  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||    
T  27471588 actgaattatgtgcttttctcaaattattagcggtatcggtgtgtcagtgtt 27471639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 602
Target Start/End: Original strand, 398787 - 398837
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||||||||| |||| |||||||||||||||| |||| |||||    
T  398787 actgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgt 398837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 582
Target Start/End: Original strand, 7918208 - 7918263
Alignment:
Q  525 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattag 582  Q
    |||||||||||||||||| |||  || ||||||||||||||||||||||| |||||||    
T  7918208 acacgacactgacacatataat--tacactgaattatgtgattttctcaaattattag 7918263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 602
Target Start/End: Original strand, 17831553 - 17831603
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||| ||||||||||||||| |||||||||||||||| |||| |||||    
T  17831553 actgaataatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 17831603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 38503357 - 38503307
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||| |||||    
T  38503357 actgaaatatatgattttctcaaattattagcggtgtcggtgtgttagtgt 38503307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 602
Target Start/End: Original strand, 40285676 - 40285726
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||| |||||    
T  40285676 actgaattatgcgattttctcaaattattagcggtgttggtgtgtcagtgt 40285726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 512 - 585
Target Start/End: Complemental strand, 44482305 - 44482234
Alignment:
Q  512 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcgg 585  Q
    |||| ||||||| ||||||||| |||||||| |||  || ||||||||||||||||||||||| |||| |||||    
T  44482305 gtgtccgacaccgacacgacaccgacacatataat--tacactgaattatgtgattttctcaaattataagcgg 44482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 601
Target Start/End: Original strand, 20157372 - 20157421
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtg 601  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||| ||||    
T  20157372 actgaattatgtgattttctcacattattagcggtgtcgatgtgtcagtg 20157421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 602
Target Start/End: Complemental strand, 36906033 - 36905984
Alignment:
Q  553 ctgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||||||||||||  ||||||||||||| ||||||| |||||    
T  36906033 ctgaattatgtgattttctcagattattagcggtgttggtgtgtcagtgt 36905984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 554 - 602
Target Start/End: Complemental strand, 6427385 - 6427337
Alignment:
Q  554 tgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||||||||||||| ||||||||||||| || |||| |||||    
T  6427385 tgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 6427337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 552 - 596
Target Start/End: Original strand, 12443482 - 12443526
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||    
T  12443482 actgaattatgtgattttctcaaattattagctgtgtcggcgtgt 12443526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 552 - 596
Target Start/End: Complemental strand, 21378615 - 21378571
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||    
T  21378615 actgaattatgtaattttttcaatttattagctgtgtcggtgtgt 21378571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 552 - 592
Target Start/End: Original strand, 26238134 - 26238174
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggt 592  Q
    |||||||||||| |||||||||| |||||||||||||||||    
T  26238134 actgaattatgttattttctcaaattattagcggtgtcggt 26238174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 552 - 620
Target Start/End: Original strand, 31672917 - 31672985
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttcggtgtccttgcttcat 620  Q
    ||||||||| |||||||| |||| |||||||| |||||||||||| ||||| | || ||| ||||||||    
T  31672917 actgaattaagtgattttttcaaattattagctgtgtcggtgtgtcagtgtcccgtatccgtgcttcat 31672985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 525 - 596
Target Start/End: Original strand, 34712380 - 34712449
Alignment:
Q  525 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    |||||||||||||||||| ||  ||| ||| |||||||| |||||||||| |||||||| ||| ||||||||    
T  34712380 acacgacactgacacatataa--ttacactaaattatgttattttctcaaattattagcagtgacggtgtgt 34712449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 605
Target Start/End: Complemental strand, 1262919 - 1262868
Alignment:
Q  554 tgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttcg 605  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||  |||||||    
T  1262919 tgaattatgtgattttctcaaattattagctgtgtcggcgtgtccgtgttcg 1262868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 591
Target Start/End: Original strand, 25098577 - 25098616
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcgg 591  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  25098577 actgaattatgtgattttctcaaattatcagcggtgtcgg 25098616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 594
Target Start/End: Original strand, 1864902 - 1864944
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgt 594  Q
    ||||||||||||||||||||||| |||||| | ||||||||||    
T  1864902 actgaattatgtgattttctcaaattattaactgtgtcggtgt 1864944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 602
Target Start/End: Original strand, 5376522 - 5376572
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||| ||||||| || |||||||||||||||| |||| |||||    
T  5376522 actgaattatgttattttcttaaattattagcggtgtcggcgtgttagtgt 5376572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 548 - 602
Target Start/End: Original strand, 6415019 - 6415073
Alignment:
Q  548 ttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||| |||||||||||||||||| | ||||||| |||||| |||| |||||    
T  6415019 ttaaactgtattatgtgattttctcaaataattagcgatgtcggcgtgtcagtgt 6415073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 16812580 - 16812530
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||||||||| |||| ||||||  ||||||||||||| |||||    
T  16812580 actgaattatgtgattttgtcaaattattattggtgtcggtgtgtcagtgt 16812530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 554 - 600
Target Start/End: Original strand, 17425117 - 17425163
Alignment:
Q  554 tgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagt 600  Q
    |||||||||||||||| |||| |||||| ||||||| ||||||||||    
T  17425117 tgaattatgtgattttatcaaattattatcggtgtccgtgtgtaagt 17425163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 594
Target Start/End: Complemental strand, 40181908 - 40181866
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgt 594  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||    
T  40181908 actgaattatgtgattttctcaaattattagcagtgtctgtgt 40181866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 596
Target Start/End: Complemental strand, 42325603 - 42325553
Alignment:
Q  546 tgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||| |||||||||||| |||||||||| |||||| |||||| |||||||    
T  42325603 tgttacactgaattatgtcattttctcaaattattatcggtgttggtgtgt 42325553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 588
Target Start/End: Complemental strand, 9709854 - 9709821
Alignment:
Q  555 gaattatgtgattttctcaatttattagcggtgt 588  Q
    |||||||||||||||||||| |||||||||||||    
T  9709854 gaattatgtgattttctcaaattattagcggtgt 9709821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 605
Target Start/End: Original strand, 19562643 - 19562696
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttcg 605  Q
    |||||| |||| ||||||||||| |||||||| ||||||| |||| ||||||||    
T  19562643 actgaactatgagattttctcaaattattagcagtgtcggcgtgtcagtgttcg 19562696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 512 - 604
Target Start/End: Original strand, 10339109 - 10339200
Alignment:
Q  512 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttc 604  Q
    |||| ||||||| ||||| |||||||||||| ||| | | ||||||||||||||||||||||| ||| | |||||||||| |||| |||||||    
T  10339109 gtgtccgacaccgacacggcactgacacatataat-taacactgaattatgtgattttctcaaattaatcgcggtgtcggcgtgtcagtgttc 10339200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 528 - 605
Target Start/End: Complemental strand, 19040411 - 19040336
Alignment:
Q  528 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttcg 605  Q
    |||||| |||||||| |||  || ||||||||||||||||||||||| |||||||||||||||| |||| ||| ||||    
T  19040411 cgacacagacacatataat--tacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtattcg 19040336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 512 - 605
Target Start/End: Complemental strand, 26562764 - 26562673
Alignment:
Q  512 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttcg 605  Q
    |||||||||||| ||||||||  |||||||| |||  || ||||||||||||||||||||||| || ||||| ||||||| ||||  |||||||    
T  26562764 gtgttcgacaccgacacgacatcgacacatataat--tacactgaattatgtgattttctcaaatttttagcagtgtcggcgtgtccgtgttcg 26562673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 528 - 602
Target Start/End: Original strand, 7265593 - 7265665
Alignment:
Q  528 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||| |||||||| |||  || ||||||||||||||||||||||| ||||||||||||| || |||| |||||    
T  7265593 cgacaccgacacatataat--tacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 7265665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 602
Target Start/End: Complemental strand, 9027240 - 9027165
Alignment:
Q  525 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||| |||||||| |||  || || ||||||||||||| |||||| |||||||||||||||| |||| |||||    
T  9027240 acacgacaccgacacatataat--tacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgt 9027165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 9658916 - 9658866
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||||||||||| || |||||||||||||||| |||| |||||    
T  9658916 actgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgt 9658866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 554 - 596
Target Start/End: Original strand, 30866168 - 30866210
Alignment:
Q  554 tgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  30866168 tgaattatgtgattttctcaaattattagcggtgttggtgtgt 30866210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 590
Target Start/End: Original strand, 5000616 - 5000686
Alignment:
Q  518 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcg 590  Q
    |||||| ||| |||||||||| |||||||  || ||||||| ||||||||||||| | |||||||||||||||    
T  5000616 gacaccgacatgacactgacatataaaat--tatactgaatcatgtgattttctcgaattattagcggtgtcg 5000686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 589
Target Start/End: Original strand, 9025491 - 9025553
Alignment:
Q  525 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtc 589  Q
    ||||||||| |||||||| |||  || ||||||||||||||||||||||| |||||||| |||||    
T  9025491 acacgacaccgacacatataat--tacactgaattatgtgattttctcaaattattagcagtgtc 9025553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 511 - 602
Target Start/End: Complemental strand, 16766773 - 16766684
Alignment:
Q  511 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||| ||||||| ||||||||| ||||| |  |||  || |||||||||||||||||| |||| |||||||| ||||||| |||| |||||    
T  16766773 tgtgtccgacaccgacacgacaccgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 16766684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 595
Target Start/End: Original strand, 31579247 - 31579290
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtg 595  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||    
T  31579247 actgaattatgtgattttctcaaattattaacggtgttggtgtg 31579290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 554 - 596
Target Start/End: Complemental strand, 7378014 - 7377972
Alignment:
Q  554 tgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||||||||||||||| || ||||||||||||| ||||    
T  7378014 tgaattatgtgattttctcaaatttttagcggtgtcggggtgt 7377972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 553 - 607
Target Start/End: Original strand, 7801179 - 7801233
Alignment:
Q  553 ctgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttcggt 607  Q
    ||||||||||||||||| |||| |||||||  ||||||| |||| ||||||||||    
T  7801179 ctgaattatgtgattttttcaaattattagttgtgtcggcgtgttagtgttcggt 7801233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 554 - 596
Target Start/End: Complemental strand, 9629418 - 9629376
Alignment:
Q  554 tgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||||||||||||||| ||||| |||||||||| ||||    
T  9629418 tgaattatgtgattttctcaaattattggcggtgtcggcgtgt 9629376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 558 - 596
Target Start/End: Original strand, 20371138 - 20371176
Alignment:
Q  558 ttatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  20371138 ttatgtgattttctcaaattattagcggtgtcggcgtgt 20371176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 601
Target Start/End: Original strand, 17341686 - 17341735
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtg 601  Q
    |||||||||||||||||| |||| |||||| ||||||||| |||| ||||    
T  17341686 actgaattatgtgattttatcaaattattaacggtgtcggcgtgtcagtg 17341735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 589
Target Start/End: Original strand, 32511688 - 32511725
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtc 589  Q
    |||||||||||||||||||| || ||||||||||||||    
T  32511688 actgaattatgtgattttcttaaattattagcggtgtc 32511725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 519 - 594
Target Start/End: Complemental strand, 44860388 - 44860315
Alignment:
Q  519 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgt 594  Q
    ||||||||||||||| |||||||| |||  || ||||||||||| ||||||||||| |||||||||||||| ||||    
T  44860388 acaccaacacgacaccgacacatataat--tacactgaattatgcgattttctcaaattattagcggtgtcagtgt 44860315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 23718063 - 23718013
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| |||||    
T  23718063 actgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgt 23718013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 24105735 - 24105685
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| |||||    
T  24105735 actgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgt 24105685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 530 - 602
Target Start/End: Complemental strand, 31808134 - 31808064
Alignment:
Q  530 acactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||||| |||  || |||||||||||||||||| | || ||||||||||||||||||||| |||||    
T  31808134 acactgacacatataat--tacactgaattatgtgattttgttaaattattagcggtgtcggtgtgtcagtgt 31808064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 596
Target Start/End: Complemental strand, 21616799 - 21616755
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||    
T  21616799 actgaattatgtgattttctcaaattattagcggtgtcggcgtgt 21616755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 512 - 590
Target Start/End: Original strand, 18889575 - 18889651
Alignment:
Q  512 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcg 590  Q
    |||| |||||| |||| ||||| ||||||||  ||  || |||||||||||||||||||||||||||||||||| ||||    
T  18889575 gtgtccgacacaaacaagacaccgacacatatgat--tacactgaattatgtgattttctcaatttattagcggcgtcg 18889651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 552 - 603
Target Start/End: Original strand, 21782840 - 21782891
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgtt 603  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||| ||||||    
T  21782840 actgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgtt 21782891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 552 - 591
Target Start/End: Original strand, 37411266 - 37411305
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcgg 591  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  37411266 actgaattatgtgattttctcaaattattagcggtgtcgg 37411305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 31284080 - 31284035
Alignment:
Q  557 attatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||||    
T  31284080 attatgtgattttctcaaattattagcagtgtcggcgtgtaagtgt 31284035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 552 - 596
Target Start/End: Original strand, 42832298 - 42832342
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    |||||| ||||| |||||||||| |||||||||||||||||||||    
T  42832298 actgaaatatgtaattttctcaaattattagcggtgtcggtgtgt 42832342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 591
Target Start/End: Complemental strand, 18276558 - 18276519
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcgg 591  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  18276558 actgaattaagtgattttctcaaattattagcggtgtcgg 18276519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 591
Target Start/End: Complemental strand, 28677946 - 28677907
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcgg 591  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  28677946 actgaattatgtgattttttcaaattattagcggtgtcgg 28677907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 594
Target Start/End: Complemental strand, 1328015 - 1327973
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgt 594  Q
    |||||||| | |||||||||||| |||||||||||||||||||    
T  1328015 actgaattttatgattttctcaaattattagcggtgtcggtgt 1327973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 21091760 - 21091710
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||| ||||| ||||||| || ||||||||||||||||||||| |||||    
T  21091760 actgaagtatgttattttcttaaattattagcggtgtcggtgtgtcagtgt 21091710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 620
Target Start/End: Complemental strand, 24894426 - 24894357
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttcg-gtgtccttgcttcat 620  Q
    |||||||||||||||||| | || |||||||| ||||||| |||| ||||| || |||||| ||||||||    
T  24894426 actgaattatgtgatttttttaaattattagctgtgtcggcgtgtcagtgtccgtgtgtccgtgcttcat 24894357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 596
Target Start/End: Original strand, 24362192 - 24362268
Alignment:
Q  518 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    |||||| |||||||| ||||||||| |||  || |||||||||||||||| |||||| |||||||||||||||| ||||    
T  24362192 gacaccgacacgacattgacacatataat--tacactgaattatgtgattctctcaaattattagcggtgtcggcgtgt 24362268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 552 - 595
Target Start/End: Complemental strand, 4611571 - 4611528
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtg 595  Q
    |||||||||||| |||||||||| ||||||||||||||||||||    
T  4611571 actgaattatgttattttctcaaattattagcggtgtcggtgtg 4611528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 591
Target Start/End: Original strand, 11927076 - 11927147
Alignment:
Q  518 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcgg 591  Q
    |||||||||||||||| |||||||| |||  || |||||||||||||||||| |||| |||||| | |||||||    
T  11927076 gacaccaacacgacaccgacacatataat--tacactgaattatgtgattttatcaaattattaacagtgtcgg 11927147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 590
Target Start/End: Complemental strand, 34897122 - 34897084
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcg 590  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  34897122 actgaattatgtgattttctcaaattattagcggtgtcg 34897084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 589
Target Start/End: Original strand, 18067956 - 18067993
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtc 589  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18067956 actgaattatgtgattttctcaaattattagcggtgtc 18067993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 556 - 596
Target Start/End: Original strand, 39954305 - 39954345
Alignment:
Q  556 aattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  39954305 aattatgtgattttctcaaattattagcggtgtcggcgtgt 39954345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 602
Target Start/End: Original strand, 15816113 - 15816201
Alignment:
Q  512 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||| ||||||||||||||||| ||||| || |||  || ||| |||||||||||||| |||| |||||||  ||||||| |||| |||||    
T  15816113 gtgtccgacaccaacacgacaccgacacttataat--tacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgt 15816201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 602
Target Start/End: Original strand, 31109518 - 31109590
Alignment:
Q  528 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||||||| |  |||| |||||||| | |||||||||||| |||||| ||||||||| |||| |||||    
T  31109518 cgacactgacacatata--gttagactgaattgtttgattttctcaaattattaacggtgtcggcgtgtcagtgt 31109590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 554 - 596
Target Start/End: Original strand, 31236601 - 31236643
Alignment:
Q  554 tgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||    
T  31236601 tgaattatgtgattttctcaaattattagcagtgtcggcgtgt 31236643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 596
Target Start/End: Original strand, 13844596 - 13844662
Alignment:
Q  528 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    |||||| |||||||| |||  || ||| ||||||||||||||||||| |||||||| ||||||| ||||    
T  13844596 cgacaccgacacatataat--tacactcaattatgtgattttctcaaattattagcagtgtcggcgtgt 13844662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 594
Target Start/End: Complemental strand, 25566910 - 25566836
Alignment:
Q  518 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgt 594  Q
    |||||||||||||||| ||||| |  |||  || |||||||||||||||||| |||| |||||||| ||||| ||||    
T  25566910 gacaccaacacgacaccgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtcagtgt 25566836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 548 - 623
Target Start/End: Original strand, 8412963 - 8413038
Alignment:
Q  548 ttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttcggtgtccttgcttcattga 623  Q
    ||||||||||||||||| ||||||||| |||||||  |||||||| ||| | ||| |||||||| |||||||||||    
T  8412963 ttaaactgaattatgtgtttttctcaaattattagttgtgtcggtctgtcaatgtccggtgtccgtgcttcattga 8413038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 528 - 594
Target Start/End: Complemental strand, 7928509 - 7928445
Alignment:
Q  528 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgt 594  Q
    |||||| |||||||| |||  || |||||||||||||||||| |||| |||||||||||||||||||    
T  7928509 cgacaccgacacatataat--tacactgaattatgtgattttttcaaattattagcggtgtcggtgt 7928445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 1438841 - 1438791
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||||||||||||||| || |||||| ||||||||||| |||||    
T  1438841 actgaattatgtgattttctcaaattgttagcgatgtcggtgtgtcagtgt 1438791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 594
Target Start/End: Original strand, 11313797 - 11313864
Alignment:
Q  525 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgt 594  Q
    |||||||||| ||||||| |||  || ||| ||||||||||||||||||| |||||||| ||||||||||    
T  11313797 acacgacactaacacatataat--tacactaaattatgtgattttctcaaattattagcagtgtcggtgt 11313864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 601
Target Start/End: Original strand, 10690284 - 10690333
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtg 601  Q
    ||||||||||||||||||||||  |||||||||||||| | |||||||||    
T  10690284 actgaattatgtgattttctcagattattagcggtgtccgagtgtaagtg 10690333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 552 - 604
Target Start/End: Original strand, 4987313 - 4987365
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttc 604  Q
    |||||||||||||||||| |||| |||||||| ||||||| |||| |||||||    
T  4987313 actgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgttc 4987365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 517 - 588
Target Start/End: Original strand, 8039824 - 8039893
Alignment:
Q  517 cgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgt 588  Q
    ||||||| ||||||||| |||||||| |||  || |||||||||| | |||||||||| |||||||||||||    
T  8039824 cgacaccgacacgacaccgacacatataat--tacactgaattatataattttctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 552 - 596
Target Start/End: Complemental strand, 8383294 - 8383250
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    |||||||||| |||||||||||| |||||||||||||||| ||||    
T  8383294 actgaattatatgattttctcaaattattagcggtgtcggcgtgt 8383250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 523 - 602
Target Start/End: Complemental strand, 11666008 - 11665931
Alignment:
Q  523 caacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||| |||||||| |||  || ||| |||| ||||||||| |||| ||||||||| ||||||||||| |||||    
T  11666008 caacacgacaccgacacatataat--tacactaaattgtgtgattttatcaaattattagcgttgtcggtgtgttagtgt 11665931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 552 - 596
Target Start/End: Original strand, 16192772 - 16192816
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||    
T  16192772 actgaattatgttattttctcaaattattaacggtgtcggtgtgt 16192816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 26290431 - 26290358
Alignment:
Q  527 acgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||||||| |||  ||||| ||| |||||||||||||||| ||||||  |||||||| |||| |||||    
T  26290431 acgacactgacacatataat--taaaccgaactatgtgattttctcaaattattaatggtgtcggcgtgtcagtgt 26290358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 586
Target Start/End: Original strand, 49505154 - 49505210
Alignment:
Q  528 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggt 586  Q
    ||||||||||||||| |||  || ||| ||||||||||||||||||| |||||||||||    
T  49505154 cgacactgacacatataat--tacactaaattatgtgattttctcaaattattagcggt 49505210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 554 - 596
Target Start/End: Original strand, 5407271 - 5407313
Alignment:
Q  554 tgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||||||||||||||| || ||||||||||||| ||||    
T  5407271 tgaattatgtgattttctcaaatttttagcggtgtcggcgtgt 5407313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 596
Target Start/End: Original strand, 8789575 - 8789616
Alignment:
Q  555 gaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    |||||||||||||||||||| |||| ||| ||||||||||||    
T  8789575 gaattatgtgattttctcaaattataagccgtgtcggtgtgt 8789616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 605
Target Start/End: Complemental strand, 10954989 - 10954936
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttcg 605  Q
    |||||||||||||||||| |||| |||||||  ||||||| |||| ||||||||    
T  10954989 actgaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgttcg 10954936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 605
Target Start/End: Original strand, 32429402 - 32429455
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttcg 605  Q
    |||||||||||||||||||| || ||||||||| |||||| |||| | ||||||    
T  32429402 actgaattatgtgattttcttaaattattagcgttgtcggagtgtcaatgttcg 32429455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 589
Target Start/End: Original strand, 34307802 - 34307839
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtc 589  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  34307802 actgaaatatgtgattttctcaaattattagcggtgtc 34307839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 519 - 596
Target Start/End: Complemental strand, 1103 - 1028
Alignment:
Q  519 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||| |||| ||||||||||||| |  |||| |||||||||||| ||||| |||| |||||||||||||||||||||    
T  1103 acaccgacaccacactgacacatata--gttacactgaattatgtaattttttcaaattattagcggtgtcggtgtgt 1028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 511 - 591
Target Start/End: Complemental strand, 3966579 - 3966501
Alignment:
Q  511 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcgg 591  Q
    ||||| ||||||  ||||||||| |||||||| |||  || |||||||| |||||||||||||| ||||||||||||||||    
T  3966579 tgtgtccgacactgacacgacaccgacacatataat--tacactgaattgtgtgattttctcaaattattagcggtgtcgg 3966501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 554 - 620
Target Start/End: Complemental strand, 30098361 - 30098295
Alignment:
Q  554 tgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttcggtgtccttgcttcat 620  Q
    ||||||||||||||||||||| |||||| |||| |||  |||| ||||| |||||||| ||||||||    
T  30098361 tgaattatgtgattttctcaaattattaacggtttcgtcgtgtcagtgtccggtgtccgtgcttcat 30098295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 554 - 630
Target Start/End: Original strand, 19737506 - 19737582
Alignment:
Q  554 tgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgttcggtgtccttgcttcattgattgaaac 630  Q
    |||||||||| |||||||||| |||||| |||| || | |||| ||||| || |||||||||||||  |||||||||    
T  19737506 tgaattatgtaattttctcaaattattatcggtttcagcgtgtcagtgtccgttgtccttgcttcagagattgaaac 19737582  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 552 - 596
Target Start/End: Original strand, 28588696 - 28588740
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||||||||||||||||| |||||| ||||||||| ||||    
T  28588696 actgaattatgtgattttctcaaattattaccggtgtcggcgtgt 28588740  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 515 - 594
Target Start/End: Original strand, 32766930 - 32767007
Alignment:
Q  515 ttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgt 594  Q
    ||||||||| |||||||||  ||||||| |||  || | |||||| || ||||||||||| |||||||||||||||||||    
T  32766930 ttcgacaccgacacgacacaaacacatataat--tacattgaattgtgcgattttctcaaattattagcggtgtcggtgt 32767007  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 591
Target Start/End: Complemental strand, 27932272 - 27932233
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcgg 591  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  27932272 actgaattatgtaattttctcaaattattagcggtgtcgg 27932233  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 602
Target Start/End: Complemental strand, 39698616 - 39698528
Alignment:
Q  512 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||| ||||||| ||||||||||||||| |  |||  || |||||||||||||||||| |||| |||||||| ||||| | |||| |||||    
T  39698616 gtgtccgacaccgacacgacactgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtgt 39698528  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 594
Target Start/End: Original strand, 6471911 - 6471953
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgt 594  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||    
T  6471911 actgaattatgtgattttctcaaattattagccgtgtcagtgt 6471953  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 556 - 602
Target Start/End: Original strand, 7175045 - 7175091
Alignment:
Q  556 aattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||||||||||| |||||| |||||||| ||||| |||||    
T  7175045 aattatgtgattttctcaaattattaacggtgtcgatgtgtcagtgt 7175091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 19438380 - 19438330
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||||||||||||||| |||| |||| ||||| ||||| |||||    
T  19438380 actgaattatgtgattttctcaaattatcagcgatgtcgatgtgtcagtgt 19438330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 556 - 602
Target Start/End: Complemental strand, 27144496 - 27144450
Alignment:
Q  556 aattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||||| ||||| |||||||||||||||| |||| |||||    
T  27144496 aattatgtgatttcctcaaattattagcggtgtcggcgtgtcagtgt 27144450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 17123080 - 17123035
Alignment:
Q  557 attatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||||||||| ||||||||||||| || |||| |||||    
T  17123080 attatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 17123035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 30502388 - 30502446
Alignment:
Q  528 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgt 588  Q
    |||||| |||||||| |||  || ||||||||| ||||||||||||| |||||||||||||    
T  30502388 cgacaccgacacatataat--tacactgaattaagtgattttctcaaattattagcggtgt 30502446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 30542731 - 30542789
Alignment:
Q  528 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgt 588  Q
    |||||| |||||||| |||  || ||||||||| ||||||||||||| |||||||||||||    
T  30542731 cgacaccgacacatataat--tacactgaattaagtgattttctcaaattattagcggtgt 30542789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 588
Target Start/End: Complemental strand, 36838606 - 36838544
Alignment:
Q  524 aacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgt 588  Q
    |||||||||| |||||||| |||  || ||| |||||||| |||||||||| |||||||||||||    
T  36838606 aacacgacaccgacacatataat--tacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

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Target: scaffold0020 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 596
Target Start/End: Original strand, 135309 - 135378
Alignment:
Q  525 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    ||||||||| |||||||| |||  || || |||||||||||||||||||| |||||||| ||||||||||||    
T  135309 acacgacaccgacacatataat--tacacagaattatgtgattttctcaaattattagcagtgtcggtgtgt 135378  T

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Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 591
Target Start/End: Original strand, 9737 - 9808
Alignment:
Q  518 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcgg 591  Q
    |||||||||||||||| |||||||| |||  || ||||||||| ||||||||||||| ||||||| || |||||    
T  9737 gacaccaacacgacaccgacacatataat--tacactgaattaagtgattttctcaaattattagtggcgtcgg 9808  T

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Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 92844 - 92794
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||| |||||||||| |||||||||||||||| |||| |||||    
T  92844 actgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgt 92794  T

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Target: scaffold0123 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 589
Target Start/End: Original strand, 44516 - 44584
Alignment:
Q  519 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtc 589  Q
    ||||| |||||| || |||||||| |||  || ||||||||||||||||||||||| || |||||||||||    
T  44516 acaccgacacgataccgacacatataat--tacactgaattatgtgattttctcaaatttttagcggtgtc 44584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 588
Target Start/End: Original strand, 263362 - 263430
Alignment:
Q  518 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgt 588  Q
    |||||| ||||||||||||||| || |||  || ||||||||||||| ||||||||| |||||||| ||||    
T  263362 gacaccgacacgacactgacacttataat--tacactgaattatgtggttttctcaaattattagcagtgt 263430  T

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Target: scaffold0306 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 13437 - 13387
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||||||||||||||| |||||||  ||||||| |||| |||||    
T  13437 actgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgt 13387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 602
Target Start/End: Original strand, 21890 - 21940
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    ||||||||||||||||||||||| |||||||  ||||||| |||| |||||    
T  21890 actgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgt 21940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 552 - 602
Target Start/End: Complemental strand, 51848 - 51798
Alignment:
Q  552 actgaattatgtgattttctcaatttattagcggtgtcggtgtgtaagtgt 602  Q
    |||||||||||||||||| |||| |||||||| ||||||| |||| |||||    
T  51848 actgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 51798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 596
Target Start/End: Complemental strand, 20239 - 20165
Alignment:
Q  520 caccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggtgtgt 596  Q
    |||| ||||||||||||||| |  |||  || |||||||||||||||||| |||| |||||||| ||||||| ||||    
T  20239 caccgacacgacactgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtcggcgtgt 20165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 511 - 587
Target Start/End: Original strand, 68225 - 68299
Alignment:
Q  511 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtg 587  Q
    ||||||||||||| | ||||||||||||| || ||  ||| ||| |||||| |||||||||||| |||||| |||||    
T  68225 tgtgttcgacaccgatacgacactgacacctataa--ttatactaaattatatgattttctcaaattattaacggtg 68299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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