View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10931_low_24 (Length: 232)
Name: NF10931_low_24
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10931_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 8973740 - 8973939
Alignment:
| Q |
16 |
agatggacatgcagtgtcatctgatataatagccgcagttgatgcctcaatatctgacggtgttgatgttctttcaatatcactaggtttgaacaatgta |
115 |
Q |
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| T |
8973740 |
agatggacatgcagtgtcatctgatataatagccgcagttgatgcctcaatatcggacggtgttgatgttctttcaatatcactaggtttgaacaatgta |
8973839 |
T |
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| Q |
116 |
tctttgtatgaagatccagtcgcaattgccactttttcagctatggaaaggggtattgttgtgtctacttcagcaggtaatgatggaccttcctttaaaa |
215 |
Q |
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| T |
8973840 |
tctttgtatgaagatccagtcgcaattgccactttttcagctatggaaaggggtgttgttgtgtctacttcagcaggtaatgatggaccttcctttaaaa |
8973939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 8962357 - 8962541
Alignment:
| Q |
32 |
tcatctgatataatagccgcagttgatgcctcaatatctgacggtgttgatgttctttcaatatcactaggtttgaacaatgtatct---ttgtatgaag |
128 |
Q |
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| T |
8962357 |
tcatctgacacaatagctgcaattgatgccgcaatatcagacggtgtggatgttctttcaatatcattaggcttcaacaatgcatctaatttgtatgaag |
8962456 |
T |
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| Q |
129 |
atccagtcgcaattgccactttttcagctatggaaaggggtattgttgtgtctacttcagcaggtaatgatggaccttcctttaa |
213 |
Q |
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| T |
8962457 |
atccaattgcaatagccacttttgcagctatggaaaaaggtgtttttgtgtctacttcagcaggtaataatggaccttcctttaa |
8962541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 8957346 - 8957515
Alignment:
| Q |
32 |
tcatctgatataatagccgcagttgatgcctcaatatctgacggtgttgatgttctttcaatatcactaggtttgaacaatgtatctttgtatgaagatc |
131 |
Q |
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| T |
8957346 |
tcatctgatgtaatagccgcaattgacgcggcaatatcagacggtgttgatgttctttcactatcatttggtattaatgacgtgcctttgtatgacgatc |
8957445 |
T |
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| Q |
132 |
cagtcgcaattgccactttttcagctatggaaaggggtattgttgtgtctacttcagcaggtaatgatgg |
201 |
Q |
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| T |
8957446 |
ctgttgccattgcaacatttgcagctatggaaaaaggtgtttttgtttccacttcagctggtaataatgg |
8957515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 8946733 - 8946564
Alignment:
| Q |
32 |
tcatctgatataatagccgcagttgatgcctcaatatctgacggtgttgatgttctttcaatatcactaggtttgaac----aatgtatctttgtatgaa |
127 |
Q |
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| T |
8946733 |
tcatctgatataatggctgcaattgatgctgcaatatcggacggtgttgatgttctttcgatttcattagg-tccaacttttgatttacctttgaatgaa |
8946635 |
T |
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| Q |
128 |
gatccagtcgcaattgccactttttcagctatggaaaggggtattgttgtgtctacttcagcaggtaatga |
198 |
Q |
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| T |
8946634 |
gatccgattgcaatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaatga |
8946564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 21687878 - 21687696
Alignment:
| Q |
32 |
tcatctgatataatagccgcagttgatgcctcaatatctgacggtgttgatgttctttcaatatcactaggtttgaacaatgtatctttgtatgaagatc |
131 |
Q |
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| T |
21687878 |
tcatctgatataatagctgcaattgatgctgcaatatctgacggtgttgacattctttcaatatcacttggctctgatgatcttcttttgtataaagatc |
21687779 |
T |
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| Q |
132 |
cagtcgcaattgccactttttcagctatggaaaggggtattgttgtgtctacttcagcaggtaatgatggaccttcctttaaa |
214 |
Q |
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| T |
21687778 |
cagttgcaattgcgacatttgcagctatggaaaaaggtatttttgtgtctacttctgcaggtaataatggaccctcgtttaaa |
21687696 |
T |
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