View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10931_low_3 (Length: 637)
Name: NF10931_low_3
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10931_low_3 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 17 - 490
Target Start/End: Original strand, 40928213 - 40928688
Alignment:
| Q |
17 |
acaagaagattgcaagcatagctgatactgatgtgtgtattgctcaagtggatgct--atgtttttcagatgactacactacttgggggttgtgtgttta |
114 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| || || ||||||| |
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| T |
40928213 |
acaagaagattgcaagcatagttgatactgatgtgtgtattgctcaagtggatgctggatgtttttcggatggctacactacttggaggctgcgtgttta |
40928312 |
T |
|
| Q |
115 |
aaaacaattctggtgacatttcgatgattgtgtgcaagaaagaaagtattgcgactgatccttgtatggcagaagcgcttggtgttaggtagtgtcttca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40928313 |
aaaacaattctggtgacatttcgatgattgtgtgcaagaaagaaagtattgcgactgatccttgtatggaagaagcgcttggtgttaggtagtgtcttca |
40928412 |
T |
|
| Q |
215 |
attggcgcgtgatcaaggtcttcaaaaattggaaatccaaactgatgctctggtggtagcagattgtatctcaggcaagagttcaaatgctaatttagat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40928413 |
attggcgcgtgatcaaggtcttcaaaaattggaaatccaaactgatgctctggtggtagcagattgtatctcaggcaagagttcaaatgctaatttagat |
40928512 |
T |
|
| Q |
315 |
cctattattgttgactgtgttgagttgttaaacacttttgtttcagcttctgtttgttatattagtagagaaaacaatggtgaagcccataagctagtgg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40928513 |
cctattattgttgactgtgttgagttgttaaacacttttgtatcagcttctgtttgttatattagtagagaaaacaatggtgaagcccataagctagtgg |
40928612 |
T |
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| Q |
415 |
gtatagcaaaattagtaggattaagaaatggatggggcttgtcccagactattctgatgccttactgtcaagtatt |
490 |
Q |
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| T |
40928613 |
gtatagcaaaattagtaggattaagaaatggatggggcttgtcccggtctattctgatgccttactgtcaagtatt |
40928688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 549 - 626
Target Start/End: Original strand, 40928738 - 40928815
Alignment:
| Q |
549 |
agatttcaattatactatctcaattatagtttggataaacatgataaatgcttgtgaataaatatggtttggctctgt |
626 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40928738 |
agatttcaattatactatctcaattatagtttggataaacatgataaatgcttgtcaataaatatggtttggctctgt |
40928815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 107 - 231
Target Start/End: Complemental strand, 5667057 - 5666933
Alignment:
| Q |
107 |
tgtgtttaaaaacaattctggtgacatttcgatgattgtgtgcaagaaagaaagtattgcgactgatccttgtatggcagaagcgcttggtgttaggtag |
206 |
Q |
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| T |
5667057 |
tgtgtttaaaaaccaatctggtgacattttgatggcagtgtgtacgaaagaaagtattgtgaccgatccttgtatggcagaagctcttgatgtgaggtgg |
5666958 |
T |
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| Q |
207 |
tgtcttcaattggcgcgtgatcaag |
231 |
Q |
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|| || | |||||| ||||||||| |
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| T |
5666957 |
tgcctccggttggcgtgtgatcaag |
5666933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 626
Target Start/End: Original strand, 40928047 - 40928094
Alignment:
| Q |
579 |
ttggataaacatgataaatgcttgtgaataaatatggtttggctctgt |
626 |
Q |
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||||||||||||||||||||||| || |||||||| |||||||||||| |
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| T |
40928047 |
ttggataaacatgataaatgcttatgtataaatatagtttggctctgt |
40928094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 17 - 490
Target Start/End: Complemental strand, 48505552 - 48505077
Alignment:
| Q |
17 |
acaagaagattgcaagcatagctgatactgatgtgtgtattgctcaagtggatgct--atgtttttcagatgactacactacttgggggttgtgtgttta |
114 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
48505552 |
acaagaagattgcaagcataggtgatactgatgtgtgtattgcttaagtggatgctggatgtttttcggatggctacactacttgggggttgtgtgttta |
48505453 |
T |
|
| Q |
115 |
aaaacaattctggtgacatttcgatgattgtgtgcaagaaagaaagtattgcgactgatccttgtatggcagaagcgcttggtgttaggtagtgtcttca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
48505452 |
aaaacaattctggtgacatttcgatgattgtgtgcaagaaagaaagtattgcgactgatccttgtatggtagaagcgcttggtgttagatagtgtcttca |
48505353 |
T |
|
| Q |
215 |
attggcgcgtgatcaaggtcttcaaaaattggaaatccaaactgatgctctggtggtagcagattgtatctcaggcaagagttcaaatgctaatttagat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48505352 |
attggcgcgtgatcaaggtcttcaaaaattggaaatccaaactgatgctctggtgatagcagattgtatctcaggcaagagttcaaatgctaatttagat |
48505253 |
T |
|
| Q |
315 |
cctattattgttgactgtgttgagttgttaaacacttttgtttcagcttctgtttgttatattagtagagaaaacaatggtgaagcccataagctagtgg |
414 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48505252 |
cctattattgttgactgtgttgagtatttaaacacttttgtttcagcttctgtttgttatattagtagagaaaacaatggtgaagcccataagctagtgg |
48505153 |
T |
|
| Q |
415 |
gtatagcaaaattagtaggattaagaaatggatggggcttgtcccagactattctgatgccttactgtcaagtatt |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48505152 |
gtatagcaaaattagtaggattaagaaatggatggggcttgtcctagactattctgatgccttactgtcaagtatt |
48505077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 549 - 626
Target Start/End: Complemental strand, 48505027 - 48504950
Alignment:
| Q |
549 |
agatttcaattatactatctcaattatagtttggataaacatgataaatgcttgtgaataaatatggtttggctctgt |
626 |
Q |
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| T |
48505027 |
agatttcaattatactatctcaattatagtttggataaacatgataaatgcttgtcaataaatatggtttggctctgt |
48504950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 626
Target Start/End: Complemental strand, 48505718 - 48505671
Alignment:
| Q |
579 |
ttggataaacatgataaatgcttgtgaataaatatggtttggctctgt |
626 |
Q |
| |
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||||||||||||||||||||||| || |||||||| |||||||||||| |
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| T |
48505718 |
ttggataaacatgataaatgcttatgtataaatatagtttggctctgt |
48505671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 192 - 310
Target Start/End: Original strand, 10268 - 10386
Alignment:
| Q |
192 |
cttggtgttaggtagtgtcttcaattggcgcgtgatcaaggtcttcaaaaattggaaatccaaactgatgctctggtggtagcagattgtatctcaggca |
291 |
Q |
| |
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|||||||| |||| ||||| |||||||||||||||||||| || |||| | |||||||||||||||||| | ||| ||| ||||| |||||||||| |
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| T |
10268 |
cttggtgtaaggtgatgtctccaattggcgcgtgatcaaggactgcaaagagtggaaatccaaactgatgttgtggcggttgcagacaacatctcaggca |
10367 |
T |
|
| Q |
292 |
agagttcaaatgctaattt |
310 |
Q |
| |
|
|||| ||||||||||||| |
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| T |
10368 |
agaggacaaatgctaattt |
10386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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