View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10931_low_4 (Length: 529)
Name: NF10931_low_4
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10931_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 27 - 524
Target Start/End: Complemental strand, 30079418 - 30078915
Alignment:
| Q |
27 |
tcatgatctaggattttgccatgtgaaattttgataaagagagaatcatagtatgaacaaatctccaccttctgtctcaatcttctctctaccttgtcct |
126 |
Q |
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| T |
30079418 |
tcatgatctaggattttgccatgtgaaattttgataaagagagaatcatagtatgaacaaatctccaccttctgtctcaatct-ctctctaccttgtccc |
30079320 |
T |
|
| Q |
127 |
tctgtct--aactcaaagtctttgttgtttagtccatttctttattcataactgtattagtactaattataaagttggtacgaaacatagcaatttgagt |
224 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30079319 |
tctgtctttaactcaaagtctttgttgtttagtccatttctttattcataactgtattagtactaattataaagttggtacgaaacatagcaatttgagt |
30079220 |
T |
|
| Q |
225 |
atagtgtataccataaagtttctattgctttttgttaacttaacaaatcacacatgacatcttaacgaggattttattaatttaaaaaggacagcaacat |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30079219 |
atagtgtataccataaagtttctattgctttttgttaactcaacaaatcacacatgacatcttaacgaggattttattaatttaaaaaggacagcaacat |
30079120 |
T |
|
| Q |
325 |
ataaaatatgaaaatatttgctcctatctggctctccacaaccatattgtacatatacatattgctaattaaatattacacaattcaaaatttacatata |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30079119 |
ataaaatatgaaaatatttgctcctatctggctctccacaaccatgttgtacatatacatattgctaattaaatattacacaattcaaaatttacatata |
30079020 |
T |
|
| Q |
425 |
ttttgtctgtat-----ttgtgtattgatcaaagagtaatgtatatgacagagttttgtgaaacttatttgtcatgtggtctacttgtttttgtttcttc |
519 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
30079019 |
ttttgtctgtattgtcattgtgtattgatcaaagagtaatgtatatgacagagttttgtgaaacttatttgtcatgtggtctactcgtttttgtttctac |
30078920 |
T |
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| Q |
520 |
tctct |
524 |
Q |
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||||| |
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| T |
30078919 |
tctct |
30078915 |
T |
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