View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10931_low_6 (Length: 436)
Name: NF10931_low_6
Description: NF10931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10931_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 49289636 - 49290050
Alignment:
| Q |
17 |
acaacaagccttaatttcttccgttcaaaaacccctatataagcatgcgacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataac |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49289636 |
acaacaagccttaatttcttcccttcaaaaacccctatataagcatgccacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataac |
49289735 |
T |
|
| Q |
117 |
taacacacattcctcacatatcaaccaacattttccacatttgacatnnnnnnnnnnnnatggagagagtaacaaagatggtttcagaaaggccagtggt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289736 |
taacacacattcctcacatatcaaccaacattttccacatttgacattatatata----atggagagagtaacaaagatggtttcagaaaggccagtggt |
49289831 |
T |
|
| Q |
217 |
gatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagatacca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49289832 |
gatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagatacca |
49289931 |
T |
|
| Q |
317 |
agagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagccaatc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49289932 |
agagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagccaatc |
49290031 |
T |
|
| Q |
417 |
aagttatgagtcttcatct |
435 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
49290032 |
aagttatgagtcttcatct |
49290050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 49296587 - 49297001
Alignment:
| Q |
17 |
acaacaagccttaatttcttccgttcaaaaacccctatataagcatgcgacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataac |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49296587 |
acaacaagccttaatttcttcccttcaaaaacccctatataagcatgccacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataac |
49296686 |
T |
|
| Q |
117 |
taacacacattcctcacatatcaaccaacattttccacatttgacatnnnnnnnnnnnnatggagagagtaacaaagatggtttcagaaaggccagtggt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296687 |
taacacacattcctcacatatcaaccaacattttccacatttgacattatatata----atggagagagtaacaaagatggtttcagaaaggccagtggt |
49296782 |
T |
|
| Q |
217 |
gatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagatacca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49296783 |
gatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagatacca |
49296882 |
T |
|
| Q |
317 |
agagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagccaatc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49296883 |
agagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagccaatc |
49296982 |
T |
|
| Q |
417 |
aagttatgagtcttcatct |
435 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
49296983 |
aagttatgagtcttcatct |
49297001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 49303318 - 49303731
Alignment:
| Q |
18 |
caacaagccttaatttcttccgttcaaaaacccctatataagcatgcgacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataact |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303318 |
caacaagccttaatttcttcccttcaaaaacccctatataagcatgccacgtttggcttattaactcaacaaacaacacaccaaaacttcaagtataact |
49303417 |
T |
|
| Q |
118 |
aacacacattcctcacatatcaaccaacattttccacatttgacatnnnnnnnnnnnnatggagagagtaacaaagatggtttcagaaaggccagtggtg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303418 |
aacacacattcctcacatatcaaccaacattttccacatttgacattatatata----atggagagagtaacaaagatggtttcagaaaggccagtggtg |
49303513 |
T |
|
| Q |
218 |
atattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagataccaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303514 |
atattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagataccaa |
49303613 |
T |
|
| Q |
318 |
gagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagccaatca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303614 |
gagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagccaatca |
49303713 |
T |
|
| Q |
418 |
agttatgagtcttcatct |
435 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
49303714 |
agttatgagtcttcatct |
49303731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 200 - 432
Target Start/End: Complemental strand, 6568113 - 6567884
Alignment:
| Q |
200 |
tcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatg |
299 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| ||||||||| |||| ||||| || || || || |||||||||| |||||||||| ||| ||| |
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|
| T |
6568113 |
tcagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatg |
6568014 |
T |
|
| Q |
300 |
aacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagct |
399 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||| ||| ||| || || | | || ||||| || |||| ||||||||||||||||| |
|
|
| T |
6568013 |
aacttgatgagatgagtggagggagagacattgaacaagcac---ttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagct |
6567917 |
T |
|
| Q |
400 |
tgttggtggagccaatcaagttatgagtcttca |
432 |
Q |
| |
|
|||||||||||| ||| |||||||||| ||||| |
|
|
| T |
6567916 |
tgttggtggagctaatgaagttatgagccttca |
6567884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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