View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10932_high_14 (Length: 296)

Name: NF10932_high_14
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10932_high_14
NF10932_high_14
[»] chr1 (1 HSPs)
chr1 (17-296)||(32681989-32682268)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 32681989 - 32682268
Alignment:
Q  17 atgctgaaactttaattgtgtgtgtcagtgacagtgtgtgctggttcagttgagttgtatatcaactgttattggaagttgttatagttgtgaccaaaac 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32681989 atgctgaaactttaattgtgtgtgtcagtaacagtgtgtgctggttcagttgagttgtatatcaactgttattggaagttgttatagttgtgaccaaaac 32682088  T
Q  117 tcattttaaccatagtgtgtatactagaaaaaagtagttgaaattggtttgttttgttttccttgttttgtacaagtgtgtgaagcaatgtgatgttatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32682089 tcattttaaccatagtgtgtatactagaaaaaagtagttgaaattggtttgttttgttttccttgttttgtacaagtgtgtgaagcaatgtgatgttatg 32682188  T
Q  217 tctgttattttaatgttgcatatggaatggaatctttggtaaataagctactattattcaataaattgatcaaatctgta 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32682189 tctgttattttaatgttgcatatggaatggaatctttggtaaataagctactattattcaataaattgatcaaatctgta 32682268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University