View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10932_high_2 (Length: 738)
Name: NF10932_high_2
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10932_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 17 - 699
Target Start/End: Complemental strand, 12120867 - 12120183
Alignment:
| Q |
17 |
cacagagtcacagtagacataaatgaagtgtatgcatagaggataagcattatttataaaagtttaaaataatgggcatgagggactgataacaagcacc |
116 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12120867 |
cacagagtcacagtaaacataaatgaagtgtatgcatagaggataagcattatttataaaagtttaaaataatgggcatgagggactgataacaagcacc |
12120768 |
T |
|
| Q |
117 |
aatatttcaatatcctaaattccatcaacattacagtctccacattttagagtccagattgaagaaaaatgcatatggaaaatgttcagtaacatattca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12120767 |
aatatttcaatatcctaaattccatcaacattacagccaccacattttagagtccagattgaagaaaaatgtatatggaaaatgttcagtaacatattca |
12120668 |
T |
|
| Q |
217 |
acaccaagtcctaattcccagcgatgtccctaaatttaaaattggttgctacgtcatttttctttgaaaatggaattgagtccaggaattaattaccatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12120667 |
acaccaagtcctaattcccagcgatgtccctaaatttaaaattggttgctacgtcatttttctttgaaaatggaattgagtccaggaattaattaccatt |
12120568 |
T |
|
| Q |
317 |
acacccaa-tttaatggggtaatcgattgggtgttagagagaatgtgagaaagagaatgttcatagcactcctctttagtcatttcatggggtaatcga- |
414 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12120567 |
acacccaattttaatggggtaatcgtttgggtgttagagagaatgtgagaaagagaatgttcatagcactcctctttagtcatttcatggggtaatcgat |
12120468 |
T |
|
| Q |
415 |
-nnnnnnnnnggcatgactagaaattgtcgaaaattatttaacacatttctgtcgnnnnnnnnnnntattattgaacacataaattgacaccatatgcaa |
513 |
Q |
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| T |
12120467 |
ttttttttttggcatgactagaaattgtcgaaaattatttaacacatttctgtcg-aaaaaaaatatattattgaacacataaattgacaccatatgcaa |
12120369 |
T |
|
| Q |
514 |
ttttcaccgtattaaaagta-nnnnnnnnnatcttcaaaaattgttataaaatcaatcagattagcttgggcacctaaatatcacgaggttacgcaaaaa |
612 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
12120368 |
ttttcaccgtattaaaagtattttttttttatcttcaaaaattgttataaaatcaattagattagcttgggcacc-aagtatcacgaggttaggcaaaaa |
12120270 |
T |
|
| Q |
613 |
agtaataaaatcaaaaccctgaagctatagctgctgtcaaaaacgctgccgcctgccgggattccaccgtgagacattctcttttcc |
699 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12120269 |
agtaataaaatcaacaccctgaagctatagctgcttccaaaaacgctgctgcctgccgggattccaccgtgagacattctcttttcc |
12120183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 391
Target Start/End: Complemental strand, 16895281 - 16895236
Alignment:
| Q |
346 |
gtgttagagagaatgtgagaaagagaatgttcatagcactcctctt |
391 |
Q |
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|||||||||||||||| ||||| ||| ||||||||||||| ||||| |
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| T |
16895281 |
gtgttagagagaatgttagaaaaagagtgttcatagcacttctctt |
16895236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 43077784 - 43077836
Alignment:
| Q |
45 |
tgtatgcatagaggataagcattatttataaaagtttaaaataatgggcatga |
97 |
Q |
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| T |
43077784 |
tgtatgcatagaggataaacattatttacaaaagttaaaaataatgagcatga |
43077836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 24886077 - 24886034
Alignment:
| Q |
346 |
gtgttagagagaatgtgagaaagagaatgttcatagcactcctc |
389 |
Q |
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| T |
24886077 |
gtgttagagagagtgttagaaagagaatgtccatagcactcctc |
24886034 |
T |
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