View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10932_high_20 (Length: 250)
Name: NF10932_high_20
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10932_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 71 - 233
Target Start/End: Complemental strand, 49680606 - 49680440
Alignment:
| Q |
71 |
gatgatatgctaaacttaaatcttatttgaaataacatttgaaaaataaactataagatagtaaaatagactgttttactcctatgagcttataagccaa |
170 |
Q |
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| T |
49680606 |
gatgatatgctaaacttaaatcttatttgaaataacatttgaaaaataaactataagatagtaaaatagactgttttactcctatgaacttgtaag-cta |
49680508 |
T |
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| Q |
171 |
taagc-----tattggtcttagccaaacatatacccatatgcacacaaactagttgtattgaatatta |
233 |
Q |
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| T |
49680507 |
taagctagtttattggtcttagccaaacatatacccaaatgcacacaaactagttgtattgaatatta |
49680440 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 18532460 - 18532505
Alignment:
| Q |
93 |
ttatttgaaataacatttgaaaaataaactataagatagtaaaata |
138 |
Q |
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| T |
18532460 |
ttatttaaaataacatctgaaaaataagctataagatagtgaaata |
18532505 |
T |
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