View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10932_high_5 (Length: 583)
Name: NF10932_high_5
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10932_high_5 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 33 - 563
Target Start/End: Original strand, 48911227 - 48911758
Alignment:
| Q |
33 |
gggcaaccagagttaggatc-tctccattgttggacattaaaagcaatagcagaaacaattaattagtacaatacctctctcatcatcacgttcattcta |
131 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
48911227 |
gggcaaccagagttaggatcctctccattgttggacattaaaagcaatagcagaaacagttaattgctacaatacctctctcatcatcacgttcattcta |
48911326 |
T |
|
| Q |
132 |
attcatatatagtatccaaacacacagaagacaaggcaaagatgatgaatacggaagaaggagaagagaaaccacttaatatatacttcataccttactt |
231 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| |
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| T |
48911327 |
attcattcatagtatccaaacacacagaagacaaggcaaagatgatgaatacggaagaaggagaagagaaagcacttaccatctacttcataccttactt |
48911426 |
T |
|
| Q |
232 |
agcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatc |
331 |
Q |
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| T |
48911427 |
agcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatc |
48911526 |
T |
|
| Q |
332 |
cttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttcacaagcagtaggcctccccgatggtgtcgaacccctcttca |
431 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48911527 |
cttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttcacaagcagtaggcctccccgatggcgtcgaacccctcttca |
48911626 |
T |
|
| Q |
432 |
ccaccaccgacctcgacaacctcaccaaaatctatcgagcagccactctactccgaccaaccatccaacacttcgtggagcagcacccaccagattgcat |
531 |
Q |
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| T |
48911627 |
ccaccaccgacctcgacaacctcaccaaaatctatcgagcagccactctactccgaccaaccatccaacacttcgtggagcagcacccaccagattgcat |
48911726 |
T |
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| Q |
532 |
cgtcgctgatttcatgtatccttgggttcatg |
563 |
Q |
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| T |
48911727 |
cgtggctgatttcatgtatccttgggttcatg |
48911758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 233 - 390
Target Start/End: Complemental strand, 48975193 - 48975036
Alignment:
| Q |
233 |
gcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatcc |
332 |
Q |
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|||||||||||||||| ||||||||||||||| || || |||||||||| | || |||| |||| |||||||| ||||| ||||| ||||| |||||| |
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| T |
48975193 |
gcacctggccacatgacccctctatgcgacattgctacactctttgcctcatgcggtcaccatgttaccatcattaccactccctctaatgcccaaatca |
48975094 |
T |
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| Q |
333 |
ttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttc |
390 |
Q |
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| T |
48975093 |
ttctcaaatccatcccttctcacaaccacctccgccttcatactgttccatttccttc |
48975036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 344
Target Start/End: Complemental strand, 48952342 - 48952213
Alignment:
| Q |
215 |
tacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacac |
314 |
Q |
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|||||||| || ||||||||| | || |||||||||||| |||| |||||||| |||||||||| | ||| |||| ||| || ||||||||||| | |
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| T |
48952342 |
tacttcattccatacttagcagcagggcacatgatccctttatgtgacatagcttctctctttgcttcacgtggtcactttgttacaatcataaccactc |
48952243 |
T |
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| Q |
315 |
cctccaatgctcaaatccttggcaaatcta |
344 |
Q |
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| T |
48952242 |
attcaaatgctaaaatccttcccaaatcta |
48952213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 543
Target Start/End: Complemental strand, 48952063 - 48952023
Alignment:
| Q |
503 |
ttcgtggagcagcacccaccagattgcatcgtcgctgattt |
543 |
Q |
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| T |
48952063 |
ttcgtggagcagcacccacctgattgcatcgtggcggattt |
48952023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 175 - 559
Target Start/End: Original strand, 5536 - 5920
Alignment:
| Q |
175 |
gatgaatacggaagaaggagaagagaaaccacttaatatatacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctc |
274 |
Q |
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|||| ||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||| || ||||||||| |||| ||||||||||| ||| |
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| T |
5536 |
gatggatatggaagaaggagaagagaaagcacttactatctacttcataccttacttagctcctggtcatatgatccctttatgtgacatagcaacactc |
5635 |
T |
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| Q |
275 |
tttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctttaaaccaacaccttcgtattcaca |
374 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| |
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| T |
5636 |
tttgccttacgccgtcaaaaagttaccatcataaccacaccctccaatgctcaaatccttggcaaatccatccctttaaaccaacacctccgtattcaca |
5735 |
T |
|
| Q |
375 |
ctgttccatttccttcacaagcagtaggcctccccgatggtgtcgaacccctcttcaccaccaccgacctcgacaacctcaccaaaatctatcgagcagc |
474 |
Q |
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| T |
5736 |
ccgttccatttccttcccatgaagttggcctccctgatggcgtcgaaagcctctccgccgccaccgacctcgagaatcttcgcaagatctttcaagccac |
5835 |
T |
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| Q |
475 |
cactctactccgaccaaccatccaacacttcgtggagcagcacccaccagattgcatcgtcgctgatttcatgtatccttgggtt |
559 |
Q |
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| T |
5836 |
cactctcctccaaccacccatccaacacttcgtggagcagcacccaccggattgcattgtggcggatttcttgtttccttgggtt |
5920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 192 - 559
Target Start/End: Original strand, 9553 - 9904
Alignment:
| Q |
192 |
gagaagagaaaccacttaatatatacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtca |
291 |
Q |
| |
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||||||||||| ||||||| || |||||||||||||||||| ||||||| || ||||||||||||||||||||| ||||| |||| |
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| T |
9553 |
gagaagagaaagcacttaaaatctacttcataccttacttatcacctggtcatatgatccctctatgcgacata----------------tacgctgtca |
9636 |
T |
|
| Q |
292 |
aaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttca |
391 |
Q |
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| T |
9637 |
aaatgttaccatcataaccacaccttccaacgctcaaatccttggcaaatctatccctttaaaccaacatctccgtattcacactgttccatttccttcc |
9736 |
T |
|
| Q |
392 |
caagcagtaggcctccccgatggtgtcgaacccctcttcaccaccaccgacctcgacaacctcaccaaaatctatcgagcagccactctactccgaccaa |
491 |
Q |
| |
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| T |
9737 |
caagaagtaggcctccccgacggtgtagaaagtctctctgccgccactgacttcaataacatggtcaaaatctttcaagctaccactctcctccgaccac |
9836 |
T |
|
| Q |
492 |
ccatccaacacttcgtggagcagcacccaccagattgcatcgtcgctgatttcatgtatccttgggtt |
559 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| |||||||||| |
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| T |
9837 |
ccatccaacacttcgtggagcagcacccaccggattgcatcgtgacagattttttgtttccttgggtt |
9904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 31742786 - 31742730
Alignment:
| Q |
65 |
gacattaaaagcaatagcagaaacaattaattagtacaatacctctctcatcatcac |
121 |
Q |
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|||| ||||||||||||| |||| |||||||| ||||||| ||||||||||||||| |
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| T |
31742786 |
gacactaaaagcaatagcggaaataattaattgctacaataactctctcatcatcac |
31742730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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