View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10932_high_6 (Length: 524)
Name: NF10932_high_6
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10932_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 194 - 508
Target Start/End: Original strand, 48976096 - 48976410
Alignment:
| Q |
194 |
ttcggagccattattcgcaatgatggccttgcaaataccatcgactcaataataatgtcaacagccactttatcacaacccctcaaattttgatctctct |
293 |
Q |
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| T |
48976096 |
ttcggagccattattcgcaatgacggccttgcaaataccatcgactcaataataatgttagtagccactttattacaaccccttaaattctgatctctct |
48976195 |
T |
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| Q |
294 |
caattgtgtgcaattttctactaccctactaatgcccaacactttcacagcgcattgggtttcaaaacaagtcgtggattgaattgggccgcgagaaaat |
393 |
Q |
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| T |
48976196 |
caattgtgtgcaattttctactaccctactaatgcccaacactttcacagcgcattgtgtttcaaaataagtcgtggattgaattgggccgcgagaaaat |
48976295 |
T |
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| Q |
394 |
tgcgaggaaccgaattgggtttcactgtaattacaccgaaaaatcaacatgtataactcccagaaattaaaccaattccaaactaataatataacaatta |
493 |
Q |
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| T |
48976296 |
tgcgaggaaccgaattgggtttcactataattacaccgaaaaatcaacatgtataactcccagaaattaaaccaattccaaactaataatataacaatta |
48976395 |
T |
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| Q |
494 |
tcagtatcttattct |
508 |
Q |
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| T |
48976396 |
tcagtatcttattct |
48976410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 48975533 - 48975725
Alignment:
| Q |
11 |
aagaaaatacaacaaatctaagttgacattttcaaagaaaaaaccaagaagtaactcctaaaacataaatctctcacctacttttatgagttcaaacttg |
110 |
Q |
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| T |
48975533 |
aagaaaatacaacaaatctaagttgacattatcaaagaaaaaaccaagaagtaactcctaaaacataaatctctcaccaacttttatgagttcaaacttg |
48975632 |
T |
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| Q |
111 |
atcagagcccttacaacatactagcaaacatgatattgtgacccaagaagagtttccgcttgctgaaatagcagagaaaatcattcggagcca |
203 |
Q |
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| T |
48975633 |
atcagagcccttacaacatactagcaaacatgatatcgtgacccaaaaagagtttccgcttgctgaaatagcaaagaaaatctttcggagcca |
48975725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 6e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 315 - 497
Target Start/End: Original strand, 32118747 - 32118929
Alignment:
| Q |
315 |
taccctactaatgcccaacactttcacagcgcattgggtttcaaaacaagtcgtggattgaattgggccgcgagaaaattgcgaggaaccgaattgggtt |
414 |
Q |
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| T |
32118747 |
taccctactaatgcccaacacattcacagcacattgggtttgaaaataggtcgtggattgaattggtcagcgagaaaattgcgaggaactgaattgggtt |
32118846 |
T |
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| Q |
415 |
tcactgtaattacaccgaaaaatcaacatgtataactcccagaaattaaaccaattccaaactaataatataacaattatcag |
497 |
Q |
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| T |
32118847 |
taactctaattacactgaaaaatcaacatgtataactcccagaaattaaaccaattcaaaagtaaaaatataacgattatcag |
32118929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 388 - 463
Target Start/End: Original strand, 32126045 - 32126120
Alignment:
| Q |
388 |
gaaaattgcgaggaaccgaattgggtttcactgtaattacaccgaaaaatcaacatgtataactcccagaaattaa |
463 |
Q |
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| T |
32126045 |
gaaaattgcgaggaactgaattgggtttcgctctaattacattgaaagatcaatatgtataactcccagaaattaa |
32126120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 6005975 - 6006037
Alignment:
| Q |
17 |
atacaacaaatctaagttgacattttcaaagaaaaaaccaagaagtaactcctaaaacataaa |
79 |
Q |
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| T |
6005975 |
atacaacaaatctaagttgacattttcaaagaataaatttacaagtaactcatacaacataaa |
6006037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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