View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10932_low_1 (Length: 765)
Name: NF10932_low_1
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10932_low_1 |
 | |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 662; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 33 - 749
Target Start/End: Original strand, 48911227 - 48911944
Alignment:
| Q |
33 |
gggcaaccagagttaggatc-tctccattgttggacattaaaagcaatagcagaaacaattaattagtacaatacctctctcatcatcacgttcattcta |
131 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
48911227 |
gggcaaccagagttaggatcctctccattgttggacattaaaagcaatagcagaaacagttaattgctacaatacctctctcatcatcacgttcattcta |
48911326 |
T |
|
| Q |
132 |
attcatatatagtatccaaacacacagaagacaaggcaaagatgatgaatacggaagaaggagaagagaaaccacttaatatatacttcataccttactt |
231 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| |
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|
| T |
48911327 |
attcattcatagtatccaaacacacagaagacaaggcaaagatgatgaatacggaagaaggagaagagaaagcacttaccatctacttcataccttactt |
48911426 |
T |
|
| Q |
232 |
agcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatc |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911427 |
agcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatc |
48911526 |
T |
|
| Q |
332 |
cttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttcacaagcagtaggcctccccgatggtgtcgaacccctcttca |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
48911527 |
cttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttcacaagcagtaggcctccccgatggcgtcgaacccctcttca |
48911626 |
T |
|
| Q |
432 |
ccaccaccgacctcgacaacctcaccaaaatctatcgagcagccactctactccgaccaaccatccaacacttcgtggagcagcacccaccagattgcat |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48911627 |
ccaccaccgacctcgacaacctcaccaaaatctatcgagcagccactctactccgaccaaccatccaacacttcgtggagcagcacccaccagattgcat |
48911726 |
T |
|
| Q |
532 |
cgtcgctgatttcatgtatccttgggttcatgaacttgcaaacaagctacaaattcctagacttgctttcaacggtttctctctgtttgctatttgtgcc |
631 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48911727 |
cgtggctgatttcatgtatccttgggttcatgaacttgcaaacaagctacaaattcctagacttgctttcaacggtttctctctgtttgctatttgtgcc |
48911826 |
T |
|
| Q |
632 |
atggaatctgttaaagcacactctctttatgaatctgcttcttttgtaattcctcatcttcctcattctattgccatgaatgcagcaccaccgaagcagc |
731 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911827 |
atggaatctgttaaagcacactctctttatgaatctgcttcttttgtaattcctcatcttcctcattctattgccatgaatgcagcaccaccgaagcagc |
48911926 |
T |
|
| Q |
732 |
tgagtaaattgttggaag |
749 |
Q |
| |
|
|||||||||| ||||||| |
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|
| T |
48911927 |
tgagtaaattattggaag |
48911944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 233 - 390
Target Start/End: Complemental strand, 48975193 - 48975036
Alignment:
| Q |
233 |
gcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatcc |
332 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || || |||||||||| | || |||| |||| |||||||| ||||| ||||| ||||| |||||| |
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|
| T |
48975193 |
gcacctggccacatgacccctctatgcgacattgctacactctttgcctcatgcggtcaccatgttaccatcattaccactccctctaatgcccaaatca |
48975094 |
T |
|
| Q |
333 |
ttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttc |
390 |
Q |
| |
|
|| |||||| || |||| || | ||||| || |||| ||||||||||||||||| |
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|
| T |
48975093 |
ttctcaaatccatcccttctcacaaccacctccgccttcatactgttccatttccttc |
48975036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 344
Target Start/End: Complemental strand, 48952342 - 48952213
Alignment:
| Q |
215 |
tacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacac |
314 |
Q |
| |
|
|||||||| || ||||||||| | || |||||||||||| |||| |||||||| |||||||||| | ||| |||| ||| || ||||||||||| | |
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|
| T |
48952342 |
tacttcattccatacttagcagcagggcacatgatccctttatgtgacatagcttctctctttgcttcacgtggtcactttgttacaatcataaccactc |
48952243 |
T |
|
| Q |
315 |
cctccaatgctcaaatccttggcaaatcta |
344 |
Q |
| |
|
|| |||||| |||||||| |||||||| |
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|
| T |
48952242 |
attcaaatgctaaaatccttcccaaatcta |
48952213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 175 - 749
Target Start/End: Original strand, 5536 - 6110
Alignment:
| Q |
175 |
gatgaatacggaagaaggagaagagaaaccacttaatatatacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctc |
274 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||| || ||||||||| |||| ||||||||||| ||| |
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|
| T |
5536 |
gatggatatggaagaaggagaagagaaagcacttactatctacttcataccttacttagctcctggtcatatgatccctttatgtgacatagcaacactc |
5635 |
T |
|
| Q |
275 |
tttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctttaaaccaacaccttcgtattcaca |
374 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| |
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|
| T |
5636 |
tttgccttacgccgtcaaaaagttaccatcataaccacaccctccaatgctcaaatccttggcaaatccatccctttaaaccaacacctccgtattcaca |
5735 |
T |
|
| Q |
375 |
ctgttccatttccttcacaagcagtaggcctccccgatggtgtcgaacccctcttcaccaccaccgacctcgacaacctcaccaaaatctatcgagcagc |
474 |
Q |
| |
|
| |||||||||||||| || | ||| |||||||| ||||| |||||| ||||| | || ||||||||||||| || || ||| |||| || ||| | |
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|
| T |
5736 |
ccgttccatttccttcccatgaagttggcctccctgatggcgtcgaaagcctctccgccgccaccgacctcgagaatcttcgcaagatctttcaagccac |
5835 |
T |
|
| Q |
475 |
cactctactccgaccaaccatccaacacttcgtggagcagcacccaccagattgcatcgtcgctgatttcatgtatccttgggttcatgaacttgcaaac |
574 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||||||||||||||||||| |||||||| || || |||||| ||| |||||||||| |||||||||||||| |
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|
| T |
5836 |
cactctcctccaaccacccatccaacacttcgtggagcagcacccaccggattgcattgtggcggatttcttgtttccttgggttgatgaacttgcaaac |
5935 |
T |
|
| Q |
575 |
aagctacaaattcctagacttgctttcaacggtttctctctgtttgctatttgtgccatggaatctgttaaagcacactctctttatgaatctgcttctt |
674 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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|
| T |
5936 |
aagcttcaaattcctagactcagtttcaacggtttctctctgtttgcaatttgtgccatagaatctgttaaagcacactctctttatgaatctgcttcat |
6035 |
T |
|
| Q |
675 |
ttgtaattcctcatcttcctcattctattgccatgaatgcagcaccaccgaagcagctgagtaaattgttggaag |
749 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| || ||||||||| ||||| | || ||||||| |
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|
| T |
6036 |
ttgtaattcctggtcttcctcattctattgccatgaatgcagctccgccgaagcagatgagtgacttattggaag |
6110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 192 - 736
Target Start/End: Original strand, 9553 - 10081
Alignment:
| Q |
192 |
gagaagagaaaccacttaatatatacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtca |
291 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||||||| ||||||| || ||||||||||||||||||||| ||||| |||| |
|
|
| T |
9553 |
gagaagagaaagcacttaaaatctacttcataccttacttatcacctggtcatatgatccctctatgcgacata----------------tacgctgtca |
9636 |
T |
|
| Q |
292 |
aaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttca |
391 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
9637 |
aaatgttaccatcataaccacaccttccaacgctcaaatccttggcaaatctatccctttaaaccaacatctccgtattcacactgttccatttccttcc |
9736 |
T |
|
| Q |
392 |
caagcagtaggcctccccgatggtgtcgaacccctcttcaccaccaccgacctcgacaacctcaccaaaatctatcgagcagccactctactccgaccaa |
491 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||| |||| || |||| ||| || | ||| | |||||||| || ||| ||||||| ||||||||| |
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|
| T |
9737 |
caagaagtaggcctccccgacggtgtagaaagtctctctgccgccactgacttcaataacatggtcaaaatctttcaagctaccactctcctccgaccac |
9836 |
T |
|
| Q |
492 |
ccatccaacacttcgtggagcagcacccaccagattgcatcgtcgctgatttcatgtatccttgggttcatgaacttgcaaacaagctacaaattcctag |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| |||||||||| ||||||||||||||||||| |||||||| || |
|
|
| T |
9837 |
ccatccaacacttcgtggagcagcacccaccggattgcatcgtgacagattttttgtttccttgggttgatgaacttgcaaacaagcttcaaattccaag |
9936 |
T |
|
| Q |
592 |
acttgctttcaacggtttctctctgtttgctatttgtgccatggaatctgttaaagcacactctctttatgaatctgcttcttttgtaattcctcatctt |
691 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| |||| |
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|
| T |
9937 |
actctctttcaacggtttctctctgtttgctatttgtgccatggaatctgttaaagcacactcactttatggatatgcttcttttgtaattcctggtctt |
10036 |
T |
|
| Q |
692 |
cctcattctattgccatgaatgcagcaccaccgaagcagctgagt |
736 |
Q |
| |
|
||||||||||||| |||||||||| |||| || |||||| ||||| |
|
|
| T |
10037 |
cctcattctattgtcatgaatgcaacaccgcctaagcagatgagt |
10081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 639
Target Start/End: Original strand, 812 - 948
Alignment:
| Q |
503 |
ttcgtggagcagcacccaccagattgcatcgtcgctgatttcatgtatccttgggttcatgaacttgcaaacaagctacaaattcctagacttgctttca |
602 |
Q |
| |
|
|||||||| ||| | ||||| ||||||||||| || ||||| | | |||||||| |||| || ||||||||||| || ||||| ||| |||| |||| |
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|
| T |
812 |
ttcgtggaacaggaaccacctgattgcatcgtagcggattttttattcccttgggtggatgagctggcaaacaagcttcacattccgagatttgccttca |
911 |
T |
|
| Q |
603 |
acggtttctctctgtttgctatttgtgccatggaatc |
639 |
Q |
| |
|
|||||||||| || ||| | || |||||||||||||| |
|
|
| T |
912 |
acggtttctcactatttaccatatgtgccatggaatc |
948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 31742786 - 31742730
Alignment:
| Q |
65 |
gacattaaaagcaatagcagaaacaattaattagtacaatacctctctcatcatcac |
121 |
Q |
| |
|
|||| ||||||||||||| |||| |||||||| ||||||| ||||||||||||||| |
|
|
| T |
31742786 |
gacactaaaagcaatagcggaaataattaattgctacaataactctctcatcatcac |
31742730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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