View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10932_low_14 (Length: 296)

Name: NF10932_low_14
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10932_low_14
NF10932_low_14
[»] chr1 (1 HSPs)
chr1 (17-296)||(32681989-32682268)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 32681989 - 32682268
Alignment:
Q  17 atgctgaaactttaattgtgtgtgtcagtgacagtgtgtgctggttcagttgagttgtatatcaactgttattggaagttgttatagttgtgaccaaaac 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32681989 atgctgaaactttaattgtgtgtgtcagtaacagtgtgtgctggttcagttgagttgtatatcaactgttattggaagttgttatagttgtgaccaaaac 32682088  T
Q  117 tcattttaaccatagtgtgtatactagaaaaaagtagttgaaattggtttgttttgttttccttgttttgtacaagtgtgtgaagcaatgtgatgttatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32682089 tcattttaaccatagtgtgtatactagaaaaaagtagttgaaattggtttgttttgttttccttgttttgtacaagtgtgtgaagcaatgtgatgttatg 32682188  T
Q  217 tctgttattttaatgttgcatatggaatggaatctttggtaaataagctactattattcaataaattgatcaaatctgta 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32682189 tctgttattttaatgttgcatatggaatggaatctttggtaaataagctactattattcaataaattgatcaaatctgta 32682268  T

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