View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10932_low_15 (Length: 279)

Name: NF10932_low_15
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10932_low_15
NF10932_low_15
[»] chr3 (5 HSPs)
chr3 (10-267)||(11897148-11897405)
chr3 (9-267)||(26432588-26432846)
chr3 (9-166)||(23424497-23424654)
chr3 (9-124)||(53608336-53608451)
chr3 (9-163)||(38647179-38647333)
[»] chr8 (4 HSPs)
chr8 (10-267)||(23132475-23132732)
chr8 (63-166)||(26587277-26587380)
chr8 (104-262)||(14760016-14760174)
chr8 (9-100)||(38348466-38348557)
[»] chr2 (11 HSPs)
chr2 (10-267)||(14653570-14653827)
chr2 (14-163)||(26791322-26791471)
chr2 (9-160)||(40328174-40328325)
chr2 (9-160)||(35135219-35135370)
chr2 (66-175)||(16322502-16322611)
chr2 (66-163)||(573245-573342)
chr2 (9-160)||(3779048-3779199)
chr2 (18-163)||(177504-177649)
chr2 (112-163)||(35062956-35063007)
chr2 (66-148)||(19265469-19265551)
chr2 (82-168)||(42403209-42403295)
[»] chr1 (4 HSPs)
chr1 (10-267)||(20284849-20285106)
chr1 (8-175)||(50236550-50236717)
chr1 (8-163)||(50451893-50452048)
chr1 (66-124)||(23465403-23465461)
[»] chr4 (6 HSPs)
chr4 (9-160)||(54477407-54477558)
chr4 (56-166)||(14307826-14307936)
chr4 (56-166)||(14291777-14291887)
chr4 (66-163)||(3881771-3881868)
chr4 (14-166)||(46784469-46784621)
chr4 (9-100)||(33803974-33804065)
[»] scaffold0036 (1 HSPs)
scaffold0036 (73-163)||(75967-76057)
[»] chr5 (2 HSPs)
chr5 (57-163)||(32874457-32874563)
chr5 (9-163)||(7817131-7817285)
[»] chr6 (4 HSPs)
chr6 (9-166)||(24893833-24893990)
chr6 (82-166)||(24990660-24990744)
chr6 (66-172)||(13599639-13599745)
chr6 (66-123)||(35233542-35233599)
[»] chr7 (3 HSPs)
chr7 (66-169)||(16769956-16770059)
chr7 (27-160)||(1353794-1353927)
chr7 (18-163)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 11897148 - 11897405
Alignment:
Q  10 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 109  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 11897247  T
Q  110 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  11897248 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcaccc 11897347  T
Q  210 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897348 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 11897405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 9 - 267
Target Start/End: Complemental strand, 26432846 - 26432588
Alignment:
Q  9 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 108  Q
    |||||||||||||| |||||||||||||| ||  ||||  | |  ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |    
T  26432846 gacatcaccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtc 26432747  T
Q  109 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacc 208  Q
    |||||||||||||||| |||||||||||||| |||||| |||||||||||||||| || |||||||| ||||| || ||| ||||||||||||||| |||    
T  26432746 tccgacaaggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 26432647  T
Q  209 catccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 267  Q
     || |||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  26432646 gattcaaatcactcctacggggccgcatttatcccacctcctttttgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 23424497 - 23424654
Alignment:
Q  9 gacatcaccatcaagctcatcatgcattgcgt-agcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggc 107  Q
    ||||||||||||||||||||||| ||||| || | || ||||   || ||| ||| | ||||| || |||||  |||| |||||||||||  | |||||     
T  23424497 gacatcaccatcaagctcatcatacattgtgtcacctcctccacatt-ctcaatattatggaaaggtaacaaaatgccccctttcaagcccacacatggt 23424595  T
Q  108 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 166  Q
    ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  23424596 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 53608451 - 53608336
Alignment:
Q  9 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 108  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  | |||||| ||||||||||| |||||  ||||  |||||| |||||| ||||| |    
T  53608451 gacatcaccatcaagctcatcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaaaatgccttctttcaggccttcacatggtc 53608352  T
Q  109 tccgacaaggtgatcc 124  Q
    || |||| ||||||||    
T  53608351 tcagacagggtgatcc 53608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 38647333 - 38647179
Alignment:
Q  9 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 108  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  | |||||| |||||||| || || ||  |||| ||||| |||||||| || || |    
T  38647333 gacatcaccatcaagctcatcatgcattgtgtttcatcatccaccttctctattctttggaacggtaataaaatgcccccttttaagccttcccacggtc 38647234  T
Q  109 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 163  Q
    || |||||||||||||| | || || || || |||||  | ||||||||||||||    
T  38647233 tcagacaaggtgatccgctctctccctacctcttcattttatgcatggaaaagct 38647179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 23132732 - 23132475
Alignment:
Q  10 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 109  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 23132633  T
Q  110 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 209  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23132632 ccgacaaggtgatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 23132533  T
Q  210 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 267  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23132532 atccaaatcacccctacggggccccatttatcccatctcctatttgcagatgatgtcc 23132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 166
Target Start/End: Original strand, 26587277 - 26587380
Alignment:
Q  63 ctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 162  Q
    ||||| ||||| ||||| ||||| || ||||||||| | |||||||||||||||||||| || ||||| || || || ||||| ||||| ||||| || |    
T  26587277 ctttgaaatggtaacaaattgccccccttcaagcctactcatggcctccgacaaggtgacccattgtctccctacctcttcattctttgtatggagaaac 26587376  T
Q  163 tttc 166  Q
    ||||    
T  26587377 tttc 26587380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 262
Target Start/End: Original strand, 14760016 - 14760174
Alignment:
Q  104 tggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgg 203  Q
    |||||| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||| ||   ||||||||| ||||| |||   |||||||| |||    
T  14760016 tggccttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgg 14760115  T
Q  204 gcacccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 262  Q
    | |||  | ||||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760116 gaaccggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 38348466 - 38348557
Alignment:
Q  9 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttc 100  Q
    ||||||||||||||||||||||||||||| ||  | || || |  | |||||| ||||||||||| ||||  ||| | ||||||||||||||    
T  38348466 gacatcaccatcaagctcatcatgcattgtgttacctcacccaccttctctatcctttggaatggcaacagattgtctcctttcaagccttc 38348557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 14653827 - 14653570
Alignment:
Q  10 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T
Q  110 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 209  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||    
T  14653727 ccaacaaggtgatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcaccc 14653628  T
Q  210 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 267  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14653627 atccaaatcactcctacggggccgcatttatcccatctcctatttgcagatgatgtcc 14653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 26791322 - 26791471
Alignment:
Q  14 caccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccga 113  Q
    |||||||||||||||||||||||||||  ||||  | || | |||||| ||||||||||| || | |||||| |||||| ||||| | ||||||||| |     
T  26791322 caccatcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcagg 26791421  T
Q  114 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 163  Q
    || ||||||||| | ||||| || ||||| || ||||||||||| |||||    
T  26791422 cagggtgatccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 40328174 - 40328325
Alignment:
Q  9 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 108  Q
    ||||| |||||||| |||||||||||||| ||  | || ||||| ||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  40328174 gacattaccatcaaactcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggac 40328273  T
Q  109 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 160  Q
    | || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  40328274 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 40328325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 35135370 - 35135219
Alignment:
Q  9 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 108  Q
    ||||| |||||||| |||||||||||||| ||  | || || || ||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  35135370 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggac 35135271  T
Q  109 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 160  Q
    | || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  35135270 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 35135219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  66 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 165  Q
    |||||||| |||||| |||| |||||||||||  | |||||||| ||||||||||| ||| | || || || |||||||| |||||||||||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  166 cagctgctat 175  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 573245 - 573342
Alignment:
Q  66 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 163  Q
    |||||||| |||||  |||  ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573245 tggaatggtaacaaaatgcatccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 3779199 - 3779048
Alignment:
Q  9 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 108  Q
    ||||| |||||||| |||||||||||||| ||  | || || || |||||  |  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  3779199 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcattgttatggaatggaaacaagctctctcctttcaagcctactcatggac 3779100  T
Q  109 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 160  Q
    | || |||||||| ||| |||| ||||||||||||||||| || ||||||||    
T  3779099 ttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaa 3779048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 177504 - 177649
Alignment:
Q  18 atcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaag 117  Q
    ||||| |||||||||||||| ||  ||||| | |  | |||| | ||||||||||| ||||| | ||| ||| |||||||| | ||||| ||  ||||||    
T  177504 atcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaag 177603  T
Q  118 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 163  Q
    |||| || ||||| ||||| || |||||| | ||||||||||||||    
T  177604 gtgaccctttgtctccttacctattcatcatctgcatggaaaagct 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 35063007 - 35062956
Alignment:
Q  112 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 163  Q
    |||||||||||||  | ||||| ||||||||||||||||| |||||||||||    
T  35063007 gacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagct 35062956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 19265469 - 19265551
Alignment:
Q  66 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcct 148  Q
    |||||||| |||||| |  | |||||||||||| | ||||| || || |||||||| ||| |||| |||||||||||||||||    
T  19265469 tggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcct 19265551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 42403295 - 42403209
Alignment:
Q  82 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcag 168  Q
    |||| |||||||||||  | ||||||||||| |||||||| ||  | || |||||||| || || || |||||||||||||||||||    
T  42403295 tgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagctttcag 42403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 20284849 - 20285106
Alignment:
Q  10 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcct 109  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||   ||||||||||||| ||||||| ||||||||    
T  20284849 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcct 20284948  T
Q  110 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcaccc 209  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20284949 gcgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 20285048  T
Q  210 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285049 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 20285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 50236717 - 50236550
Alignment:
Q  8 ggacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggc 107  Q
    ||||||||||| ||| |||||||||||||| ||  | || || |  ||||||||  | ||||| ||||||||| |||| |||||||||||| | ||||||    
T  50236717 ggacatcaccaccaaactcatcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggc 50236618  T
Q  108 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctat 175  Q
    ||| || ||||||||||| | |||||||| ||||||||| | || ||||| || || |||| ||||||    
T  50236617 ctcagataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactatcagttgctat 50236550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 50451893 - 50452048
Alignment:
Q  8 ggacatcaccatcaagctcatcatgcattgcgt-agcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatgg 106  Q
    ||||||||||||||| || ||||||||||| || | || |||| | || ||||||  | |||||||| |||||  |||||| |||||| ||| | |||||    
T  50451893 ggacatcaccatcaaacttatcatgcattgtgtcacctcctcc-actttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatgg 50451991  T
Q  107 cctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 163  Q
    ||||||||||||||||||| | || ||||| || ||||| ||||| ||||| |||||    
T  50451992 cctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  66 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatcc 124  Q
    |||||||| ||||| ||||||| |||||||||| | ||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 54477558 - 54477407
Alignment:
Q  9 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 108  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  |||| ||| ||||||||||| |||||| | ||  ||||||||||| | ||||| |    
T  54477558 gacatcaccatcaagctcatcatgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtc 54477459  T
Q  109 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 160  Q
    | || ||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  54477458 tgcgccaaggtgatcctttgtccccttatctcttcattctttgcatggaaaa 54477407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 14307826 - 14307936
Alignment:
Q  56 ctctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 155  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| |||| |||    
T  14307826 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatttgtatg 14307925  T
Q  156 gaaaagctttc 166  Q
    ||||| |||||    
T  14307926 gaaaaactttc 14307936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 166
Target Start/End: Original strand, 14291777 - 14291887
Alignment:
Q  56 ctctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 155  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| | || |||    
T  14291777 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatctgtatg 14291876  T
Q  156 gaaaagctttc 166  Q
    ||||| |||||    
T  14291877 gaaaaactttc 14291887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 3881771 - 3881868
Alignment:
Q  66 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 163  Q
    |||||||| |||||  |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| ||||| |||||||||||    
T  3881771 tggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 46784621 - 46784469
Alignment:
Q  14 caccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccga 113  Q
    |||||||||||||||||||||||| ||  | ||  | | || |||  | ||||||||||| || || |||||||||||||| ||| | ||||||||  ||    
T  46784621 caccatcaagctcatcatgcattgtgttacgtcatcaactttctccgtcctttggaatggaaataaattgccgcctttcaaacctactcatggccttaga 46784522  T
Q  114 caaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 166  Q
    |||||||||||  | || || || || ||||||||||||||| |||| |||||    
T  46784521 caaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaactttc 46784469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 33803974 - 33804065
Alignment:
Q  9 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttc 100  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  ||||||||||| |||||||| |||||  |||| ||||||||||||||    
T  33803974 gacatcaccatcaagctcatcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaaatgcctcctttcaagccttc 33804065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 75967 - 76057
Alignment:
Q  73 ggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 163  Q
    |||||||| ||||  | ||||||||| | ||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  57 tctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatgg 156  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||| || ||| | || || ||| | |||||| |||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  157 aaaagct 163  Q
    |||||||    
T  32874463 aaaagct 32874457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 7817131 - 7817285
Alignment:
Q  9 gacatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcc 108  Q
    |||||||| |||||||||||||||||||| ||| | ||  | |  ||||||||  | ||||||||||||||  | ||  ||||||||||| | ||||| |    
T  7817131 gacatcacaatcaagctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 7817230  T
Q  109 tccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 163  Q
    || |||| ||||| || || || ||||| |||||||| |||||||||||||||||    
T  7817231 tcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 24893990 - 24893833
Alignment:
Q  9 gacatcaccatcaagctcatcatgcattgcgt-agcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggc 107  Q
    ||||||||||||||||||||||||||||| || | || ||||   || ||| ||| | |||||||| |||||  |||| |||||||||||  | |||||     
T  24893990 gacatcaccatcaagctcatcatgcattgtgtcacctcctccacatt-ctccatattatggaatggtaacaaaatgccccctttcaagcccacacatggt 24893892  T
Q  108 ctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 166  Q
    ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  24893891 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 24893833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 24990744 - 24990660
Alignment:
Q  82 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 166  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| ||||||||||| ||||||||    
T  24990744 tgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagctttc 24990660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 13599639 - 13599745
Alignment:
Q  66 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 165  Q
    |||||||| |||||||| ||||  ||||||||| | ||||  ||||| |||||||||||  | || |||||||| |||||| | || |||||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  166 cagctgc 172  Q
    |||||||    
T  13599739 cagctgc 13599745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 35233542 - 35233599
Alignment:
Q  66 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatc 123  Q
    |||||||| |||||||||||   |||||||||| | ||||| ||||||||||||||||    
T  35233542 tggaatggaaacaagttgcctaatttcaagcctacacatggtctccgacaaggtgatc 35233599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 16770059 - 16769956
Alignment:
Q  66 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 165  Q
    |||||||| ||||| ||||||| |||||| ||| | ||||| || ||||||||||||||  | || |||||||| |||||| | || |||||||| || |    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactct 16769960  T
Q  166 cagc 169  Q
    ||||    
T  16769959 cagc 16769956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 1353927 - 1353794
Alignment:
Q  27 atcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgt 126  Q
    |||||||||||||| || ||  | | || |||||| || | ||||||||| ||| || | || ||||||||| | |||||||||  ||||||||||||      
T  1353927 atcatgcattgcgttgcctcctccactttctctatcctctcgaatgggaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatccac 1353828  T
Q  127 tgtccccttatcttttcatcctttgcatggaaaa 160  Q
    | || || ||||||||||| ||||| ||||||||    
T  1353827 tctcaccatatcttttcattctttgtatggaaaa 1353794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 1579304 - 1579159
Alignment:
Q  18 atcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaag 117  Q
    ||||| |||||||||||||| ||  ||||| | | || |||||| || | |||| | ||||||||||| || ||  | ||| | ||||| ||| |||| |    
T  1579304 atcaatctcatcatgcattgtgtttcttcttcaactttctctattctctagaatagaaacaagttgcctccctttcatcctactcatgggctcagacagg 1579205  T
Q  118 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 163  Q
    |||||||| | |||||||| || || || |||||||||||||||||    
T  1579204 gtgatccgctctccccttacctctttattctttgcatggaaaagct 1579159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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