View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10932_low_16 (Length: 272)
Name: NF10932_low_16
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10932_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 41569564 - 41569830
Alignment:
| Q |
1 |
aataaataattgagaccagttccaggcttccagaagacttccaattcaagaaaattagtataaaataatatactcgtttaatttcaatttgactataaat |
100 |
Q |
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| T |
41569564 |
aataaataattgagaccagttccaggcttccagaagacttccaattcaagaaaattggtataaaataatatactcgtttaatttcaatttgactataaat |
41569663 |
T |
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| Q |
101 |
atatattaatgttgccttccttattatttcatttaac------------aattctcacaaaatttgaattgatcaatt-aaataactcccccatgaggat |
187 |
Q |
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| T |
41569664 |
atatattaatgttgccttccttattatttcatttaacaaacttttcaaaaaatctcacaaaatttgaatggatcagttaaaataactcccccatgagaat |
41569763 |
T |
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| Q |
188 |
gttttttctatgtttgcatcttttactcttcctattttcatccttctctttatgttcatcttctaat |
254 |
Q |
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|||| ||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||| |
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| T |
41569764 |
gtttcttctatgtttgcatcttttgcttttcctattttcatccttctcttcatgttcatcttctaat |
41569830 |
T |
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