View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10932_low_18 (Length: 269)
Name: NF10932_low_18
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10932_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 1865463 - 1865704
Alignment:
| Q |
20 |
tggcactgatggaaaagctgtagaggttaatccaaatatcggagatgctattctacatggtgtggattcaaatttatctaacgcgtttaataatggtggg |
119 |
Q |
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| T |
1865463 |
tggcattgatggaaaagctgtagaggttaatccaaatatcggagatgctattctacatggtgtggattcaaatttatctaacgcgtttaataatggtggg |
1865562 |
T |
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| Q |
120 |
tcatcatctggtattattgatatgtcttttcatggagatatttcaagtgtgccttataatactcaaaatacaaacatgagtctacaacaaggaatcagtt |
219 |
Q |
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| T |
1865563 |
tcatcatctggtattattgatatgtcttttcatggagatatttcaagtgtgccttataatactcaaaatacaaacatgagtctacaacaaggaatcagtt |
1865662 |
T |
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| Q |
220 |
ggggggcaaacatatcaaaacctagatattcaagttcttctc |
261 |
Q |
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| T |
1865663 |
ggggggcaaacatatcaaaacctagatattcaagttcttctc |
1865704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 68 - 261
Target Start/End: Original strand, 1865259 - 1865452
Alignment:
| Q |
68 |
tattctacatggtgtggattcaaatttatctaacgcgtttaataatggtgggtcatcatctggtattattgatatgtcttttcatggagatatttcaagt |
167 |
Q |
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| T |
1865259 |
tattctacatggtgtagattcaagtttatctaatac---taaaaatggtggatcatcatccggtattattgatatgtcttttcatggagatatttcaaat |
1865355 |
T |
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| Q |
168 |
gtgcc---ttataatactcaaaatacaaacatgagtctacaacaaggaatcagttggggggcaaacatatcaaaacctagatattcaagttcttctc |
261 |
Q |
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| T |
1865356 |
gtgtcgacttataatactcaaaatacaaacatgagtctacaacaaggaatcagtgggggggcaaacatatcaaaacctggatattcaagttcttctc |
1865452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 51575399 - 51575275
Alignment:
| Q |
92 |
tttatctaacgcgtttaataatggtgggtcatcatctggtattattgatatgtcttttcatggagatatttcaagtgtgccttataatactcaaaataca |
191 |
Q |
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| T |
51575399 |
tttatctaacgtgtctaatagcggtggttcatcatttggtatggttgatgtgtctcctcgtggtgatatttcaagcatgccttataatactcggaactca |
51575300 |
T |
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| Q |
192 |
aacatgagtctacaacaaggaatca |
216 |
Q |
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| T |
51575299 |
aacatgggtctacaccaagaaatca |
51575275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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