View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10932_low_19 (Length: 254)
Name: NF10932_low_19
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10932_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 29718432 - 29718199
Alignment:
| Q |
1 |
attccaagcacggagcagcttctaaccttgttcgtgtagttgtgcatgatcaatccttgctttatgataagagacaagaccgtcattaaaacaaaacagc |
100 |
Q |
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| T |
29718432 |
attccaaacacggagcagcttctaaccttgttcgtgtagttgtgcatgatcaatccttgctttatgataagagacaataccgtcgtgaaaacaaaacagc |
29718333 |
T |
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| Q |
101 |
aaaatgataacacatcatgaataacatagtgtaccatttcgctgttgttggtggcgatggtggttgtgaggatgcaatcatgaagctgctcataagtatg |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29718332 |
aaaatgataacac--catgaataacatagtgtaccatttcgctgttgttggtggcgatggtggttgtgaggatgcaatcatgaagctgctcataagtatg |
29718235 |
T |
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| Q |
201 |
atagtcaccacggtgaagagagtgctcagcatcacc |
236 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
29718234 |
atagtcaccacggtgaagagggtgctcagcatcacc |
29718199 |
T |
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