View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10932_low_22 (Length: 249)

Name: NF10932_low_22
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10932_low_22
NF10932_low_22
[»] chr8 (7 HSPs)
chr8 (54-212)||(43539143-43539301)
chr8 (54-187)||(59590-59723)
chr8 (54-187)||(43539752-43539885)
chr8 (1-67)||(43539059-43539125)
chr8 (71-185)||(60168-60282)
chr8 (55-187)||(35675653-35675785)
chr8 (40-72)||(59545-59577)
[»] chr4 (6 HSPs)
chr4 (54-212)||(29980175-29980333)
chr4 (54-187)||(29978872-29979007)
chr4 (54-137)||(39267759-39267842)
chr4 (54-140)||(39268849-39268935)
chr4 (45-152)||(21621852-21621959)
chr4 (83-153)||(21623103-21623173)
[»] chr7 (4 HSPs)
chr7 (54-187)||(8484158-8484291)
chr7 (54-187)||(8077545-8077681)
chr7 (57-132)||(8075526-8075601)
chr7 (70-152)||(17200662-17200744)
[»] chr3 (4 HSPs)
chr3 (54-140)||(26652603-26652689)
chr3 (76-187)||(27823789-27823900)
chr3 (69-152)||(40206924-40207008)
chr3 (84-153)||(40205950-40206019)
[»] chr1 (1 HSPs)
chr1 (83-152)||(50107190-50107259)
[»] chr5 (2 HSPs)
chr5 (70-149)||(43099258-43099337)
chr5 (72-152)||(43099118-43099198)
[»] chr2 (1 HSPs)
chr2 (63-126)||(8420060-8420123)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 43539143 - 43539301
Alignment:
Q  54 gtcactttagtccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaacta 153  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  43539143 gtcactttagtccccgactcaggataaactacaaaatagtccctgaatgtgtatatctgttatcagtttaatccttaccgttaaaaaattctgttaacta 43539242  T
Q  154 ccaatgtgtcaattatagggaccaaattgaaagtnnnnnnnntatttcttattcatgat 212  Q
    || |||||||||||||||||||||||||||||||        |||||||||||||||||    
T  43539243 ccgatgtgtcaattatagggaccaaattgaaagtaaaaaaaatatttcttattcatgat 43539301  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 59590 - 59723
Alignment:
Q  54 gtcactttagtccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaacta 153  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||  ||||||||||||||||||      
T  59590 gtcactttagtccctgactcaggataaactacaaaatagtccctgaatgggtagatctgtcatcagtttagtccttacaattaaaaaattatgttaaccg 59689  T
Q  154 ccaatgtgtcaattatagggaccaaattgaaagt 187  Q
       |||||||||| ||||||||||||||||||||    
T  59690 atgatgtgtcaatcatagggaccaaattgaaagt 59723  T

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Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 43539885 - 43539752
Alignment:
Q  54 gtcactttagtccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaacta 153  Q
    |||| |||||||||| ||||| |||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||  ||||||||||     
T  43539885 gtcattttagtcccctactcaggataaactacaaaatagtccttgaatatgcacatctgttatcagtttagtccttaccgttaaaaacctatgttaactc 43539786  T
Q  154 ccaatgtgtcaattatagggaccaaattgaaagt 187  Q
       |||||||||| ||||||||||||||||||||    
T  43539785 atgatgtgtcaatcatagggaccaaattgaaagt 43539752  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 43539059 - 43539125
Alignment:
Q  1 caaaaataaataaatgaattatggaatgtcaagaaaaaattattgagtaaatagtcactttagtccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43539059 caaaaataaataaatgaattatggaatgtcaagaaaaaattattgagtaaatagtcactttggtccc 43539125  T

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Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 60282 - 60168
Alignment:
Q  71 ctcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaactaccaatgtgtcaattata 170  Q
    |||| ||||||||||| ||||||||||||||||||| | ||||||||||| ||||| ||||| ||||||| || |||||||| |  |||||||| | |||    
T  60282 ctcaggataaactacagaatagtccctgaatgtgtagacctgttatcagtctagtctttacctttaaaaatttctgttaactgctgatgtgtcattcata 60183  T
Q  171 gggaccaaattgaaa 185  Q
    |||||||||||||||    
T  60182 gggaccaaattgaaa 60168  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 35675653 - 35675785
Alignment:
Q  55 tcactttagtccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaactac 154  Q
    |||||||||||| | ||| | |||||||||||||||| ||  ||||| |||| |||||||||||||| | |||||||||||||||| || |||||| |      
T  35675653 tcactttagtcctcaacttaggataaactacaaaatattctttgaatatgtacatctgttatcagttcaatccttaccgttaaaaatttctgttaattga 35675752  T
Q  155 caatgtgtcaattatagggaccaaattgaaagt 187  Q
      ||||||||||||||| ||||||||| |||||    
T  35675753 tgatgtgtcaattatagagaccaaattaaaagt 35675785  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 59545 - 59577
Alignment:
Q  40 ttattgagtaaatagtcactttagtccccgact 72  Q
    |||||||||||||||||||||||||||| ||||    
T  59545 ttattgagtaaatagtcactttagtccctgact 59577  T

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Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 54 - 212
Target Start/End: Complemental strand, 29980333 - 29980175
Alignment:
Q  54 gtcactttagtccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaacta 153  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| |||    
T  29980333 gtcactttagtccccaactcaagataaactacaaaatagtccctgaatgtgtatatttgttatcagtttagtctttaccgttaaaaaattctgttaccta 29980234  T
Q  154 ccaatgtgtcaattatagggaccaaattgaaagtnnnnnnnntatttcttattcatgat 212  Q
    |  |||||||||||||||| |||||  |||||||        |||||||||||||||||    
T  29980233 cttatgtgtcaattataggaaccaatctgaaagtaaaaaaaatatttcttattcatgat 29980175  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 29978872 - 29979007
Alignment:
Q  54 gtcactttagt-ccccgactcaagataaactac-aaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaac 151  Q
    ||||||||||| |||||||| | ||| || ||| ||||||||| |||||  | || || ||||||||||||| |||||||||||||||| || |||||||    
T  29978872 gtcactttagttccccgacttatgattaaataccaaaatagtctctgaaaatatacatttgttatcagtttaatccttaccgttaaaaatttttgttaac 29978971  T
Q  152 taccaatgtgtcaattatagggaccaaattgaaagt 187  Q
    |  | |||||| ||||| ||||||||||||||||||    
T  29978972 tcacgatgtgttaattagagggaccaaattgaaagt 29979007  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 39267759 - 39267842
Alignment:
Q  54 gtcactttagtccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaa 137  Q
    ||||||| |||| |||| | | |||||| ||||| | ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  39267759 gtcacttcagtcgccgattgaggataaaatacaataaagtgcctgaatgtgtacatctgttatcagtttagtccttaccgttaa 39267842  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 39268935 - 39268849
Alignment:
Q  54 gtcactttagtccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaa 140  Q
    |||||||||||| |||||||   ||||| ||||| | ||| |||||| |||||| |||||||||||||||||  |||||||||||||    
T  39268935 gtcactttagtctccgactctgaataaaatacaataaagttcctgaacgtgtatctctgttatcagtttagtttttaccgttaaaaa 39268849  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 152
Target Start/End: Original strand, 21621852 - 21621959
Alignment:
Q  45 gagtaaatagtcactttagtccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaatta 144  Q
    |||||||| || ||||| ||||| |||||| ||| || ||||||||||||  |||||||| |  || ||||||| |||||||| |   |||||| |||||    
T  21621852 gagtaaatggttactttggtccctgactcaggattaaatacaaaatagtcattgaatgtgcacttccgttatcactttagtccctgatgttaaataatta 21621951  T
Q  145 tgttaact 152  Q
    ||||||||    
T  21621952 tgttaact 21621959  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 21623173 - 21623103
Alignment:
Q  83 tacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaacta 153  Q
    ||||||||||||| |||||||| |  |||||||||| ||||||||    ||||||| ||||||||||||||    
T  21623173 tacaaaatagtccttgaatgtgcacttctgttatcactttagtccccgacgttaaataattatgttaacta 21623103  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 8484291 - 8484158
Alignment:
Q  54 gtcactttagtccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaacta 153  Q
    |||||| |||| ||||||| ||||||||||| |||||||||| |||||||||| || ||||||||||||||| |||||||||||||  || |||||||      
T  8484291 gtcactctagttcccgacttaagataaactataaaatagtccatgaatgtgtaaatttgttatcagtttagtacttaccgttaaaattttctgttaaccg 8484192  T
Q  154 ccaatgtgtcaattatagggaccaaattgaaagt 187  Q
    |  |||||||||| |||||||| |||||||||||    
T  8484191 cagatgtgtcaatcatagggactaaattgaaagt 8484158  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 8077681 - 8077545
Alignment:
Q  54 gtcactttagtccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtcctt---accgttaaaaaattatgttaa 150  Q
    |||||||||||| |||||||| |||||| || |||||| |  ||||||||||| |||||||||| |||||||||||   |||||| ||||||||||||||    
T  8077681 gtcactttagtctccgactcaggataaattataaaataatttctgaatgtgtagatctgttatctgtttagtccttataaccgttgaaaaattatgttaa 8077582  T
Q  151 ctaccaatgtgtcaattatagggaccaaattgaaagt 187  Q
    | ||  |||||||||| |||| ||||||||| |||||    
T  8077581 cgactgatgtgtcaatcatagagaccaaattaaaagt 8077545  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 8075526 - 8075601
Alignment:
Q  57 actttagtccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttacc 132  Q
    ||||||||| |||||| | |||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||    
T  8075526 actttagtctccgacttatgataaactacaaaataatccttgaatgtgtagatctgttatcagtttagtccttacc 8075601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 17200744 - 17200662
Alignment:
Q  70 actcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaact 152  Q
    |||||||||||| |||||||||||| ||| |||||||  ||| |||||| ||||||| ||  ||||||||  || ||||||||    
T  17200744 actcaagataaaatacaaaatagtctctggatgtgtacctctattatcaatttagtcattgacgttaaaaccttgtgttaact 17200662  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 26652689 - 26652603
Alignment:
Q  54 gtcactttagtccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaa 140  Q
    |||||||||||||| |||| | |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||    
T  26652689 gtcactttagtccctgacttaggataaaatacaaaatagtccatgaatgtgtatctctgttatcagtttagtccttactgttaaaaa 26652603  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 27823789 - 27823900
Alignment:
Q  76 gataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaactaccaatgtgtcaattatagggac 175  Q
    |||||| ||||| | ||||  ||||||| ||| ||||||||| ||||||| |||||||||||||| || |||||| |    |||||||||||||| |||     
T  27823789 gataaaatacaataaagtctttgaatgtctatctctgttatcggtttagttcttaccgttaaaaacttctgttaaatggtgatgtgtcaattataaggat 27823888  T
Q  176 caaattgaaagt 187  Q
    ||||||||||||    
T  27823889 caaattgaaagt 27823900  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 40207008 - 40206924
Alignment:
Q  69 gactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtcc-ttaccgttaaaaaattatgttaact 152  Q
    |||||| ||| || || ||| |||||| |||||||| || || |||||||||||||||| ||| |||||||||||||||||||||    
T  40207008 gactcatgattaagtataaattagtccttgaatgtgcatttccgttatcagtttagtcccttaacgttaaaaaattatgttaact 40206924  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 40205950 - 40206019
Alignment:
Q  84 acaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaacta 153  Q
    ||||| ||||| ||||||||| |  || ||||||||||||||| ||  ||||||||||||||||||||||    
T  40205950 acaaagtagtctctgaatgtgcacttccgttatcagtttagtcattggcgttaaaaaattatgttaacta 40206019  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 50107259 - 50107190
Alignment:
Q  83 tacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaact 152  Q
    |||||||||||| ||||||||| |  || ||||||| ||||||||||  ||||||| |||||||||||||    
T  50107259 tacaaaatagtctctgaatgtgcacttccgttatcactttagtccttggcgttaaataattatgttaact 50107190  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 43099337 - 43099258
Alignment:
Q  70 actcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgtta 149  Q
    ||||||||| || |||| | ||||  |||||||||||  ||||||||||||||||||  || ||||||||| ||||||||    
T  43099337 actcaagattaaatacatagtagtttctgaatgtgtagttctgttatcagtttagtctctaacgttaaaaacttatgtta 43099258  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 43099118 - 43099198
Alignment:
Q  72 tcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaact 152  Q
    ||||||| || ||||||||||||  || |||||||   | |||||||||||||||| || ||||||||| || ||||||||    
T  43099118 tcaagattaaatacaaaatagtctttgcatgtgtagtaccgttatcagtttagtccctaacgttaaaaacttttgttaact 43099198  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 8420060 - 8420123
Alignment:
Q  63 gtccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtc 126  Q
    ||||| || ||||||| || |||||| ||||||||||||||| |  ||||||||||||||||||    
T  8420060 gtccctgagtcaagattaaatacaaagtagtccctgaatgtgcacttctgttatcagtttagtc 8420123  T

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