View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10932_low_23 (Length: 248)
Name: NF10932_low_23
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10932_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 34723689 - 34723628
Alignment:
| Q |
168 |
tcggttttgggctttaagatgacttcaaatggataaactcacctctacatcgtggcaaatgc |
229 |
Q |
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| T |
34723689 |
tcggttttgggctttaagatgacttcaaatggataaactcacctctacatcgtggcaaatgc |
34723628 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 34723847 - 34723760
Alignment:
| Q |
10 |
gcagagaaggtggagtaagatgagcaggaatgattattcaagtgaagaagcgccaagcacnnnnnnnccgcctcttacattactagcg |
97 |
Q |
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| T |
34723847 |
gcagtgaaggtggagtaagatgagcaggaatgattattcaagtgaagaagcgccaagcacaaaaaaactgcctcttacattactagcg |
34723760 |
T |
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