View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10932_low_25 (Length: 240)
Name: NF10932_low_25
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10932_low_25 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0419 (1 HSPs) |
| |
|
| [»] scaffold0277 (2 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 43538790 - 43539012
Alignment:
| Q |
18 |
caattactgagcaacaacaatgtctaaccacctctcagaaaaagaagnnnnnnnncgacgtttaaccataaatcatagtataacacattacacccttttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43538790 |
caattactgagcaacaacaatgtctaaccacctctcagaaaaagaagaaaaaaaacgacgtttaaccataaatcatagtataacacattacacccttttt |
43538889 |
T |
|
| Q |
118 |
tgtgtgtgggcatttcacattacacctacatcaatgttgtgtatgaactatgaactgtaaaatatcttttttataaagctaaatataacaccaaaacacg |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43538890 |
tgtgtgtggacatttcacattacacctacatcaatgttgtgtatgaactatgaactgtaaaatatcttttttataaagctaaatataacaccaaaacacg |
43538989 |
T |
|
| Q |
218 |
ccaataatgtttaagaaagcaat |
240 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
43538990 |
tcaataatgtttaagaaagcaat |
43539012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 12514 - 12462
Alignment:
| Q |
188 |
ttataaagctaaatataacaccaaaacacgccaataatgtttaagaaagcaat |
240 |
Q |
| |
|
|||||||||||| |||||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
12514 |
ttataaagctaagcataacatcaaaacatgtcaataatgtttaagaaagcaat |
12462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 8828 - 8880
Alignment:
| Q |
188 |
ttataaagctaaatataacaccaaaacacgccaataatgtttaagaaagcaat |
240 |
Q |
| |
|
|||||||||||| |||||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
8828 |
ttataaagctaagcataacatcaaaacatgtcaataatgtttaagaaagcaat |
8880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 17578 - 17630
Alignment:
| Q |
188 |
ttataaagctaaatataacaccaaaacacgccaataatgtttaagaaagcaat |
240 |
Q |
| |
|
|||||||||||| |||| | ||||||| | |||||||||||||||||||||| |
|
|
| T |
17578 |
ttataaagctaagcataatatcaaaacatgtcaataatgtttaagaaagcaat |
17630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 28777468 - 28777413
Alignment:
| Q |
185 |
tttttataaagctaaatataacaccaaaacacgccaataatgtttaagaaagcaat |
240 |
Q |
| |
|
||||||||||| ||| |||||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
28777468 |
tttttataaagttaagcataacatcaaaacatgtcaataatgtttaagaaagcaat |
28777413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 28799172 - 28799117
Alignment:
| Q |
185 |
tttttataaagctaaatataacaccaaaacacgccaataatgtttaagaaagcaat |
240 |
Q |
| |
|
||||||||||| ||| |||||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
28799172 |
tttttataaagttaagcataacatcaaaacatgtcaataatgtttaagaaagcaat |
28799117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University