View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10932_low_28 (Length: 210)
Name: NF10932_low_28
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10932_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 8758158 - 8757981
Alignment:
| Q |
16 |
aagaattatgagtggctgaaaaaccttaacatttacaatgatgatggcaatgtactactcttcctactgatgcaatttatgatggaatcctcttgaacct |
115 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8758158 |
aagaattatgaatggctgaaaaaccttaacatttacaatgatgatggcaatgtactattcttcctactgatgcaatttatgatggaatcctcttgaacct |
8758059 |
T |
|
| Q |
116 |
ctagactgataaagctccaacctactcttggcttcttgcaacaattcttcaagggtttcatcatgttgcatgaaagat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8758058 |
ctagactgataaagctccaacctactcttggcttcttgcaacaattcttcaagggtttcatcatgttgcatgaaagat |
8757981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 32030362 - 32030448
Alignment:
| Q |
71 |
tactcttcctactgatgcaatttatgatggaatcctcttgaacctctagactgataaagctccaacctactcttggcttcttgcaacaat |
160 |
Q |
| |
|
||||||||||| ||||| ||||| || |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| |
|
|
| T |
32030362 |
tactcttcctattgatgtaatttttg---gaatcctcttgaacctctagactggtaaagctccagcctactcttggactcttgcaacaat |
32030448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 28035158 - 28035212
Alignment:
| Q |
97 |
atggaatcctcttgaacctctagactgataaagctccaacctactcttggcttct |
151 |
Q |
| |
|
|||||||||||| | |||||| || |||||||| ||||||||||| ||||||||| |
|
|
| T |
28035158 |
atggaatcctctggtacctcttgattgataaagttccaacctacttttggcttct |
28035212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University