View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10932_low_3 (Length: 657)
Name: NF10932_low_3
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10932_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Original strand, 10067007 - 10067645
Alignment:
| Q |
1 |
caaccaacctcaaattgcgcaaaccccaccaaaagcagtagaagaatttatgatgaaagtttgtattcaactccaccacacgagacgttagagcatccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10067007 |
caaccaacctcaaattgcgcaaaccccaccaaaagcagtagaagaatttatgatgaaagtttgtattcaactccaccacacgagacgttagagcatccat |
10067106 |
T |
|
| Q |
101 |
aaatattccaaaattgaaaactgttgggtcaatgatatcatcaggatctttgtaaggacaagtagcagaattgttgagaattgaaaaaagtgtcgaattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10067107 |
aaatattccaaaattgaaaactgttgggtcaatgatatcatcaggatctttgtaaggacaagtagcagaattgttgagaattgaaaaaagtgtcgaattg |
10067206 |
T |
|
| Q |
201 |
actcgtccgcagctcagataggaatcatcaaagaatggagtattcttcaaccgtctgcgccaacaccgcaactctgattctattgaaaacaaataccaaa |
300 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10067207 |
actcgtccacagctcagataggaatcatcaaagaacggagtattcttcaaccgtctgcgccaacaccgcaactctgattctattgaaaacaaataccaaa |
10067306 |
T |
|
| Q |
301 |
atgctccaacaacctaatatcacaaataatttggattttttatcataaaacttagcttatagtaacaaggaacatacataaactaatgcttgtgacagaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10067307 |
atgctccaacaacctaatatcacaaataatttggattttttatcataaaacttagcttatagtaacaaggaacatacataaactaatgcttgtgacagaa |
10067406 |
T |
|
| Q |
401 |
gtaacaaaattacaagcttacatgacttgctagcatataaagaaagagattataagcagctccagcccatgctgtctcagttaatataccagaagtgctt |
500 |
Q |
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| T |
10067407 |
gtaacaaaattacaagcttacatgacttgctagcatataaagaaagagattataagcagctccagcccatgctgtctcagttaatataccagaagtgctt |
10067506 |
T |
|
| Q |
501 |
gttacttcattgaacaacgtatagattcgcataagtcttggcgcgtattgtgttattatcgtatacttcaaccaatcctttgttatatatggaactgagc |
600 |
Q |
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| T |
10067507 |
gttacttcattgaacaacgtatagattcgcataagtcttggcgcgtattgtgttattatcgtatacttcaaccaatcctttgttatatatggaactgagc |
10067606 |
T |
|
| Q |
601 |
cttgtggaattggaatcatagctaaaatcaccatctaat |
639 |
Q |
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| T |
10067607 |
cttgtggaattggaatcatagctaaaatcaccatctaat |
10067645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 48464735 - 48464639
Alignment:
| Q |
418 |
ttacatgacttgctagcatataaagaaagagattataagcagctccagcccatgctgtctcagttaatataccagaagtgcttgttacttcattgaa |
514 |
Q |
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||||||||||||||||||| || || || ||||| ||| |||||||||||||||||||||| || ||||| || ||||| || |||||||| ||||| |
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| T |
48464735 |
ttacatgacttgctagcatgtagaggaaaagattgtaaacagctccagcccatgctgtctctgtcaatatgcctgaagttctagttacttctttgaa |
48464639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 48465147 - 48465104
Alignment:
| Q |
3 |
accaacctcaaattgcgcaaaccccaccaaaagcagtagaagaa |
46 |
Q |
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| T |
48465147 |
accaaccttaaatttcgcaaaccccaccaaaagcagtagaagaa |
48465104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 419 - 481
Target Start/End: Complemental strand, 41390408 - 41390346
Alignment:
| Q |
419 |
tacatgacttgctagcatataaagaaagagattataagcagctccagcccatgctgtctcagt |
481 |
Q |
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|||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||| ||||| |
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| T |
41390408 |
tacatgacttgcaagcatgtaaagaaagagattaaatgcagctccagcccatgctgtttcagt |
41390346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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