View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10932_low_4 (Length: 656)
Name: NF10932_low_4
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10932_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Original strand, 43090564 - 43090992
Alignment:
| Q |
16 |
cattacacacatgaacaacttacaaagtaacaaaccatgttatgttactattaaacaaatagaannnnnnnatgtagtaaaaaagaatcaccttggaaga |
115 |
Q |
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| T |
43090564 |
cattacacacatgaacaacttacaaagtaacaaaccatgttatgttactattaaacaaatagaattttt--atgtagtaaaaaagaaacaccttggaaga |
43090661 |
T |
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| Q |
116 |
atcaaattcttgaaaggtaaagcagttcaaaagttgtaaaagaagaagtggtggaaagtgaaagacccaaaattgtccatggaactcagaaaaagaagag |
215 |
Q |
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| T |
43090662 |
atcaaattcttgaaaggtaaagcagttcaaaagttgtaaaagaagaagtggtggaaagtgaaagacccaaaattgtccatggaactcagaaaaagaagag |
43090761 |
T |
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| Q |
216 |
aagtgaaacagaagaggcccacagtgaaattatatgtatgttcaatgttcattcattcatctgtccctccctatgagcgacttgtccttaaaaaagatag |
315 |
Q |
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| T |
43090762 |
aagtgaaacagaagaggcccacagtgaaattatatgtatgttcaatgttcattcattcatctgtccctccctatgagcgacttgtccttaaaaaagatag |
43090861 |
T |
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| Q |
316 |
atac-----ttcagtgtcctaaaatatctgacacactcttgaatgcattcctagttaatcttcccttcccttatagttataacaaatatatcaacttctt |
410 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43090862 |
atacttcagttcagtgtcctaaaatatctgacacactcttgaatgcattcctagttaatcttcccatcccttatagttataacaaatatatcaacttctt |
43090961 |
T |
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| Q |
411 |
cttctgctaaatttcttcaatgtgtgtgtat |
441 |
Q |
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| T |
43090962 |
cttctgctaaatttcttcaatgtgtgtgtat |
43090992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 442 - 636
Target Start/End: Original strand, 43091052 - 43091246
Alignment:
| Q |
442 |
aactccctaaatcaaagaaacagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
541 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091052 |
aactccctaaatcaaagaaaaagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
43091151 |
T |
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| Q |
542 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
636 |
Q |
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| T |
43091152 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
43091246 |
T |
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