View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10932_low_9 (Length: 358)
Name: NF10932_low_9
Description: NF10932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10932_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 2015728 - 2015389
Alignment:
| Q |
1 |
atcatgtttccatttatgttcaggtgtcagcatgagccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2015728 |
atcatgtttccatttatgttcaggtgtcagcatgagccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcatt |
2015629 |
T |
|
| Q |
101 |
aaactgaaagaacaattttttcaacaaaatggtggcttactactacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2015628 |
aaactgaaagaacaattttttcaacaaaatggtggcttactactacaacaagaagtagtgaggcacggagggtcaactgaaacaactaaagtcttcactg |
2015529 |
T |
|
| Q |
201 |
ttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2015528 |
ttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaag |
2015429 |
T |
|
| Q |
301 |
aattgtagctattaagaagtccaaaatcagtgaccctaac |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2015428 |
aattgtagctattaagaagtccaaaatcagtgaccctaac |
2015389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 40568020 - 40568343
Alignment:
| Q |
13 |
tttatgttcaggtgtcagcatgagccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaa |
112 |
Q |
| |
|
||||||| ||||||||||| | ||||| || ||||||||| || |||||||||||||||| |||||| |||||||||||||||||| ||| |||||| |
|
|
| T |
40568020 |
tttatgtccaggtgtcagcgtaagcctcatattactactggtgggtagcttttatgcgtattgggcattgaagaaaagaaagctcattcgacttaaagaa |
40568119 |
T |
|
| Q |
113 |
caattttttcaacaaaatggtggcttactactacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaa |
212 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||| |||| ||||| ||||| |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
40568120 |
caattttttcaacaaaacggtggcttactgttacaacaacagatagttaggcatggagggtcaactgaaacagctaaagtgttcactgttgaggagctaa |
40568219 |
T |
|
| Q |
213 |
atgaagcaaccaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctat |
312 |
Q |
| |
|
||||||||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
40568220 |
atgaagcaaccaataactttgatgaaggtaagatcctaggccaaggtggtcagggaactgtttacaaaggagttttacaaaataaaagaattgtagcaat |
40568319 |
T |
|
| Q |
313 |
taagaagtccaaaatcagtgaccc |
336 |
Q |
| |
|
|| ||||||||| |||||||||| |
|
|
| T |
40568320 |
aaaaaagtccaaagtcagtgaccc |
40568343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 40579078 - 40579401
Alignment:
| Q |
13 |
tttatgttcaggtgtcagcatgagccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaa |
112 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||| ||| |||||||||||||||| ||||||||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
40579078 |
tttatgttcaggtgtcagtgtaagcctcgtagcactgctgattggaagcttttatgcatatttggcattcaagaaaagaaagttcattaaacttaaagaa |
40579177 |
T |
|
| Q |
113 |
caattttttcaacaaaatggtggcttactactacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaa |
212 |
Q |
| |
|
|| ||||| ||||||||||||||| |||| |||||||||| || |||||| ||||| |||||||||| | |||||||||||| ||||||||||||| |
|
|
| T |
40579178 |
cattttttccaacaaaatggtggcatactgttacaacaacagatatggaggcatggaggttcaactgaaatagctaaagtcttcaaagttgaggagctaa |
40579277 |
T |
|
| Q |
213 |
atgaagcaaccaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctat |
312 |
Q |
| |
|
| || ||||||||||||||||| ||||||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
40579278 |
aagatgcaaccaacaacttcgatgaaggcacgatcctaggccaaggtggtcagggaattgtttacaaaggagttttacaagataacagaattgtagcaat |
40579377 |
T |
|
| Q |
313 |
taagaagtccaaaatcagtgaccc |
336 |
Q |
| |
|
|| ||||||||||| |||||||| |
|
|
| T |
40579378 |
aaaaaagtccaaaataagtgaccc |
40579401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 35 - 336
Target Start/End: Original strand, 40572643 - 40572944
Alignment:
| Q |
35 |
agccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaacaattttttcaacaaaatggtg |
134 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
40572643 |
agcctcgtagcactgctgattggaagcttttatgcatatttggcattcaagaaaagaaagttcattaaacttcaagaacatttttttcaacaaaatggtg |
40572742 |
T |
|
| Q |
135 |
gcttactactacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcga |
234 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||| |||||||||| | |||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
40572743 |
gcttactgttacaacaacagatagggaggcacggaggttcaactgaaatagctaaagtcttcaaagttgaggagctaaaagaagcaaccaacaacttcga |
40572842 |
T |
|
| Q |
235 |
cgaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgac |
334 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||| ||||||||||||||||||||| |||| ||||||||||| || || ||||||||||| |||||| |
|
|
| T |
40572843 |
tcaaggcaagatcctaggccaaggtggtcaaggaattgtttacaaaggagttttacaaaataacagaattgtagcaataaaaaagtccaaaataagtgac |
40572942 |
T |
|
| Q |
335 |
cc |
336 |
Q |
| |
|
|| |
|
|
| T |
40572943 |
cc |
40572944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 40601576 - 40601898
Alignment:
| Q |
13 |
tttatgttcaggtgtcagcatgagccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaa |
112 |
Q |
| |
|
||||||| |||||||| || | |||| |||||||||||||| |||||| | ||||| ||||| ||||| |||||||||| || ||||||| |||||| |
|
|
| T |
40601576 |
tttatgtacaggtgtctgcgtaggcctcgtagcactactggtaggaagcatgtatgcatatttagcattgaagaaaagaagtcttgttaaacttaaagaa |
40601675 |
T |
|
| Q |
113 |
caattttttcaacaaaatggtggcttactactacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaa |
212 |
Q |
| |
|
|| |||||||||||||| ||||| ||||| ||||||||||| ||| | ||| ||||| ||| | | |||| |||||||||||||| |||||||||||| |
|
|
| T |
40601676 |
catttttttcaacaaaacggtggtttactgttacaacaacaaatagcaaagcatggaggatcagccggaacacctaaagtcttcactattgaggagctaa |
40601775 |
T |
|
| Q |
213 |
atgaagcaaccaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctat |
312 |
Q |
| |
|
|| ||||||||||||||||| | ||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || || |
|
|
| T |
40601776 |
ataaagcaaccaacaacttcaatgaaagcaggatcctaggccaaggtggtcagggaacagtttacaaaggagttttacaagataacagaattgtcgcaat |
40601875 |
T |
|
| Q |
313 |
taagaagtccaaaatcagtgacc |
335 |
Q |
| |
|
|| ||||||| ||||||||||| |
|
|
| T |
40601876 |
aaaaaagtccacaatcagtgacc |
40601898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 40597408 - 40597731
Alignment:
| Q |
13 |
tttatgttcaggtgtcagcatgagccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaa |
112 |
Q |
| |
|
||||||| ||||||| || | ||||| |||| ||||||||| |||||||||||||| |||| ||| || ||||||| |||| |||||||||| |||||| |
|
|
| T |
40597408 |
tttatgtccaggtgttagtgtaagcctcgtaggactactggtgggaagcttttatgcttattgggctttgaagaaaataaagatcattaaacttaaagaa |
40597507 |
T |
|
| Q |
113 |
caattttttcaacaaaatggtggcttactactacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaa |
212 |
Q |
| |
|
| |||||| | ||||| ||||||||||| || |||||||| |||||| ||| ||||| || || ||||| |||| |||||||| |||||||| ||| |
|
|
| T |
40597508 |
gagttttttaagcaaaacggtggcttactgttagaacaacaaatagtgaagcatggagggtcgtctaaaacacttaaaatcttcactattgaggagttaa |
40597607 |
T |
|
| Q |
213 |
atgaagcaaccaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctat |
312 |
Q |
| |
|
|||| ||||||| ||||||| | |||||||| || ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| || |
|
|
| T |
40597608 |
atgaggcaaccagcaacttcaatgaaggcaaaatcctaggccaaggtggtcagggaacagtttacaaaggagttttagaagataaaagtattgtagcaat |
40597707 |
T |
|
| Q |
313 |
taagaagtccaaaatcagtgaccc |
336 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
40597708 |
aaagaagtcaaaaatcagtgaccc |
40597731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 36 - 335
Target Start/End: Original strand, 40590949 - 40591248
Alignment:
| Q |
36 |
gccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaacaattttttcaacaaaatggtgg |
135 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40590949 |
gcctcgtagcactactggttggaagcaattatgcttatttggcattgaaacaaagaaagcttgataaacttaaagaacaattttttcaacaaaatggtgg |
40591048 |
T |
|
| Q |
136 |
cttactactacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgac |
235 |
Q |
| |
|
|||||| | |||||| | ||| ||||| | | | ||||| |||||| | | ||| |||||| |||||||||||||||||||||| ||||| || || |
|
|
| T |
40591049 |
cttactgttgcaacaaaagataggaaggcatgaaaggtcaaccgaaacacccagagtgttcactattgaggagctaaatgaagcaactaacaattttgat |
40591148 |
T |
|
| Q |
236 |
gaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgacc |
335 |
Q |
| |
|
||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||| ||||| |
|
|
| T |
40591149 |
gaaggaaagattctaggcaaaggttctcagggaacagtttacaaaggagttttacaagataaaagtattgtagcaataaaaaagtccaaaatcaatgacc |
40591248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University