View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10933_high_1 (Length: 368)
Name: NF10933_high_1
Description: NF10933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10933_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 188 - 362
Target Start/End: Complemental strand, 13475894 - 13475720
Alignment:
| Q |
188 |
ttcatcacctgaagtcggcacttgagttttagatgaacctttgatagtaatgacagacaacgaagtaacgaactagaagtcgcattttcattacctaaag |
287 |
Q |
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| T |
13475894 |
ttcattacctgaagtctgcacttgagttttagatgaacctttgatagtaatgatagacaacgaagaaacgaactagaagtcgcattttcattacctaaag |
13475795 |
T |
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| Q |
288 |
tctgtatccttttaatagaactcatgggaggtgagtgtaattttccttattcttatcattctcgtatttctctgc |
362 |
Q |
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| T |
13475794 |
tctgtgtaattttaatagaacatacgggaggtgagtgtaattttacttattcctatcattctcgtatttctctgc |
13475720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 188 - 363
Target Start/End: Original strand, 14020229 - 14020402
Alignment:
| Q |
188 |
ttcatcacctgaagtcggcacttgagttttagatgaacctttgatagtaatgacagacaacgaagtaacgaactagaagtcgcattttcattacctaaag |
287 |
Q |
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| T |
14020229 |
ttcattacctgaagtatgcacttgagttttagatgaacctttgatagtaacgacagacaacgaaggaatgaactagaagtcacattttcattacctgaag |
14020328 |
T |
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| Q |
288 |
tctgtatccttttaatagaactcatgggaggtgagtgtaattttccttattcttatcattctcgtatttctctgct |
363 |
Q |
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| T |
14020329 |
tccgtat--ttttaatagaacttatgggaggtgagtgtaattttccttattcttatcattctcgtatttctctgct |
14020402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 230 - 361
Target Start/End: Original strand, 14108462 - 14108593
Alignment:
| Q |
230 |
gatagtaatgacagacaacgaagtaacgaactagaagtcgcattttcattacctaaagtctgtatccttttaatagaactcatgggaggtgagtgtaatt |
329 |
Q |
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| T |
14108462 |
gatagtaatgacagacaacgaagtaacgaactagaagtcgcattttcattacctgaagtctgtatccttttaatagaacttatgggaggtgagtgtaatt |
14108561 |
T |
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| Q |
330 |
ttccttattcttatcattctcgtatttctctg |
361 |
Q |
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| T |
14108562 |
ttcattattcctatcattttcgtatttctctg |
14108593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 14108390 - 14108451
Alignment:
| Q |
131 |
ctttatcgattctcatgttgatgtggtagattctaccccagcctgtttcatcctacgttcat |
192 |
Q |
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| T |
14108390 |
ctttatcgattctcatgttgatgtggtagattctaccccagcctgtttcatcctacgttcat |
14108451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 13476202 - 13476130
Alignment:
| Q |
15 |
actctcttcctcaggtataatctaccacttgattttttgctgacagagataagaaaattttattttctttctt |
87 |
Q |
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| T |
13476202 |
actctcttcctcaggtataatctaccacttgagtttttgctgagagggataagaaaatttaattttctttctt |
13476130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 24786788 - 24786909
Alignment:
| Q |
124 |
ttgctgtctttatcgattctcatgttgatgtggtagattctaccccagcctgtttcatcctacgttcatcacctgaagtcggcacttgagttttagatga |
223 |
Q |
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||||||||||||||| ||||| |||||||||||||| ||||||||||||| ||| | ||||| ||| | ||||| |||| |||||| |||||| |||| |
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| T |
24786788 |
ttgctgtctttatcggttctcctgttgatgtggtaggttctaccccagcccgttccctcctattttctttacctgcagtctacacttgcgttttatatga |
24786887 |
T |
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| Q |
224 |
acctttgatagtaatgacagac |
245 |
Q |
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| T |
24786888 |
acatttgatagtaatgacagac |
24786909 |
T |
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