View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10933_low_2 (Length: 240)
Name: NF10933_low_2
Description: NF10933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10933_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 40718269 - 40718494
Alignment:
| Q |
1 |
gaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcattttaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40718269 |
gaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacatatataactttcctctaataacagcgcattttaaa |
40718368 |
T |
|
| Q |
101 |
ggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttttaccgcttctccgggcgttgccatcttcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
40718369 |
ggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttttaccacttctccgggtgttgccatcttcg |
40718468 |
T |
|
| Q |
201 |
gaaacttagctcaacagaatttgttg |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
40718469 |
gaaacttagctcaacagaatttgttg |
40718494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 14183520 - 14183683
Alignment:
| Q |
9 |
agcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcattttaaaggtgcgga |
108 |
Q |
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|||||||| |||||||||| | | ||| |||||||||||||| ||||||||| ||||| | |||||| ||||||| | ||||||||||||||||| |
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| T |
14183520 |
agcgtgttaatgatccaacccgattatttaacctttgctatagcgtcacatcagatggatatgattttcctataataacgacacattttaaaggtgcgga |
14183619 |
T |
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| Q |
109 |
tattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgctttt |
172 |
Q |
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| T |
14183620 |
tgttaagttgcatcctattagtacatttgttgatgttgcagatggcattgtttgtcttgctttt |
14183683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 14192467 - 14192613
Alignment:
| Q |
6 |
tagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcattttaaaggtgc |
105 |
Q |
| |
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|||| |||||||| ||||| |||||| ||||||||||||||||||| || | | || ||||| | |||||| |||| ||| ||||||||||||||| |
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| T |
14192467 |
tagaacgtgttgacgatcctactcaaacattaaacctttgctatagtgtcaaagctgagggatatgattttcctataatcacaatgcattttaaaggtgc |
14192566 |
T |
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| Q |
106 |
ggatattaagttgcatcccattagtacctttgtttccgttgccgatg |
152 |
Q |
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||| | | |||||||| ||||| || |||||||| ||||| |||| |
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| T |
14192567 |
agatgtcgatttgcatcctattagcacatttgtttcggttgctgatg |
14192613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 14183716 - 14183755
Alignment:
| Q |
187 |
cgttgccatcttcggaaacttagctcaacagaatttgttg |
226 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||||||| |
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| T |
14183716 |
cgtttccatcttcggaaacttagctcagcagaatttgttg |
14183755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 19648983 - 19648847
Alignment:
| Q |
1 |
gaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcattttaaa |
100 |
Q |
| |
|
||||||||| |||||||||||||| | ||||| |||||||||||| ||||||| |||||||||| |||| | |||||| |||| || || ||||||||| |
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| T |
19648983 |
gaaactagatcgtgttgatgatcctaatcaactattaaacctttgttatagtatcacatcagaccaatatgattttcctataatcactgcacattttaaa |
19648884 |
T |
|
| Q |
101 |
ggtgcggatattaagttgcatcccattagtacctttg |
137 |
Q |
| |
|
||||| |||||||||||| | || ||||||||||||| |
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| T |
19648883 |
ggtgcagatattaagttgaacccaattagtacctttg |
19648847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 34666262 - 34666432
Alignment:
| Q |
1 |
gaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcattttaaa |
100 |
Q |
| |
|
||||||||| |||||||||||||| | ||||||||| | ||| ||||||||| | |||| | |||| | |||||| |||| || || ||||||||| |
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| T |
34666262 |
gaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgcacattttaaa |
34666361 |
T |
|
| Q |
101 |
ggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttt |
171 |
Q |
| |
|
||||| |||||| |||||||| | ||||||||||||||| | || | |||| ||||||||||||||||| |
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| T |
34666362 |
ggtgccgatattgagttgcattctattagtacctttgttccaattactgatggtattgtttgctttgcttt |
34666432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 34646568 - 34646738
Alignment:
| Q |
1 |
gaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaataacagcgcattttaaa |
100 |
Q |
| |
|
||||||||| |||||||||||||| | ||||||||| | ||| ||||||||| | |||| | |||| | |||||| |||| || | ||||||||| |
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| T |
34646568 |
gaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgtacattttaaa |
34646667 |
T |
|
| Q |
101 |
ggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttt |
171 |
Q |
| |
|
||||| ||| || |||||||| | ||||||||||||||| | || | |||| ||||||||||||||||| |
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| T |
34646668 |
ggtgccgatgttgagttgcattctattagtacctttgttccaattactgatggtattgtttgctttgcttt |
34646738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 45645837 - 45645899
Alignment:
| Q |
74 |
tttcctctaataacagcgcattttaaaggtgcggatattaagttgcatcccattagtaccttt |
136 |
Q |
| |
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||||||||||| || || |||||||||||||| ||| || |||||||| | |||||||||||| |
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| T |
45645837 |
tttcctctaatcaccgcacattttaaaggtgctgatgttgagttgcattctattagtaccttt |
45645899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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