View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10933_low_3 (Length: 238)
Name: NF10933_low_3
Description: NF10933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10933_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6753462 - 6753682
Alignment:
| Q |
1 |
aaattcaaagcgtgtaaattgtaatcacactaacctttagaatcaattttcccccaccaacttgtgaatgttggatgcaaatggaatgtacaacaaattc |
100 |
Q |
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| T |
6753462 |
aaattcaaagcgtgtgaattgtaatcacactaacctttaaaatcaattttcccccaccaacttttgaatgttggatgcaaatggaatgtacaacgaattc |
6753561 |
T |
|
| Q |
101 |
ccttcaggatactctgattgccttcatgtggattgcataaacacaagcatatcttttgatgataatttacaaaaatatgtttcctacacttcaatcgtac |
200 |
Q |
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||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
6753562 |
ccttcag-atactttaattgccttcatgtgaattgcataaacacaagcatatcttttgataataatttacaaaaatatgtttcctacacttcaatcatac |
6753660 |
T |
|
| Q |
201 |
attgagaaatgaatgatgattt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6753661 |
attgagaaatgaatgatgattt |
6753682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 32572464 - 32572589
Alignment:
| Q |
101 |
ccttcaggatactctgattgccttcatgtggattgcataaacacaag---catatcttttgatgataatttacaaaaatatgtttcctacacttcaatcg |
197 |
Q |
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| T |
32572464 |
ccttcaggatactttgaataccttgatgtggtttacataaacacaacaaacatatcttttgataataatttacaaaaatatgtttcctacacttgaatca |
32572563 |
T |
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| Q |
198 |
tacatt-gagaaatgaatgatgattt |
222 |
Q |
| |
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| |||| |||||||||| ||||||| |
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| T |
32572564 |
tgcattagagaaatgaagaatgattt |
32572589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 178
Target Start/End: Original strand, 928363 - 928542
Alignment:
| Q |
2 |
aattcaaagcgtgtaaattgtaatcacactaacctttagaatcaattttcccccaccaacttgtgaatgttggatgcaaatggaatgtacaacaaattcc |
101 |
Q |
| |
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|||| ||||||||| |||||| |||||||||||||||| | |||||| | | ||||||||||| || |||||||||||||| ||||||| ||||| |
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| T |
928363 |
aatttaaagcgtgtgaattgtgatcacactaacctttaaagtcaattcgctctcaccaacttgtagatattggatgcaaatgggatgtacagtgaattct |
928462 |
T |
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| Q |
102 |
cttcaggatactctgattgccttcatgtggattgcataaac---acaagcatatcttttgatgataatttacaaaaatat |
178 |
Q |
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| T |
928463 |
cttcaagatactttgaataccttgatgtggtttgcataaacacaacaagcatatcttttgataataatttacaaaaatat |
928542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 22523643 - 22523799
Alignment:
| Q |
71 |
ttggatgcaaatggaatgtacaacaaattcccttcaggatactctgattgccttcatgtggatt-gcataaaca---caagcatatcttttgatgataat |
166 |
Q |
| |
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||||||||||||| ||||||||||||||| || ||||||| || | || | |||||| || ||||||||| ||| ||||| |||| || ||| | |
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| T |
22523643 |
ttggatgcaaatgagatgtacaacaaattcttttaaggatacattgtataccatgatgtgggtttgcataaacataacaatcatatttttttataatagt |
22523742 |
T |
|
| Q |
167 |
ttacaaaaatatgtttcctacacttcaatcgtacatt-gagaaatgaatgatgattt |
222 |
Q |
| |
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|||||||||||| ||||||||| ||||||| | ||| ||||||||||||||||||| |
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|
| T |
22523743 |
ttacaaaaatatatttcctacatttcaatcatgaattagagaaatgaatgatgattt |
22523799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 33903693 - 33903619
Alignment:
| Q |
149 |
atatcttttgatgataatttacaaaaatatgtttcctacacttcaatcgtacatt-gagaaatgaatgatgattt |
222 |
Q |
| |
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|||| ||||||| ||| ||||||||||||||||||||||||| ||||| | |||| |||||||||| ||||||| |
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| T |
33903693 |
atatattttgataatagtttacaaaaatatgtttcctacactgcaatcatgcattagagaaatgaagaatgattt |
33903619 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 52984466 - 52984421
Alignment:
| Q |
143 |
acaagcatatcttttgatgataatttacaaaaatatgtttcctaca |
188 |
Q |
| |
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|||||| ||||||||||| ||| |||||||||||||||||| |||| |
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| T |
52984466 |
acaagcctatcttttgataatagtttacaaaaatatgtttcataca |
52984421 |
T |
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