View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10934_high_2 (Length: 452)
Name: NF10934_high_2
Description: NF10934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10934_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 40749472 - 40749910
Alignment:
| Q |
1 |
tactagagaatataagtgtgattgtggtacactcttctcaaggtaattcaattcacnnnnnnnnn-agtatcaaaaaatttaggtgactttggtttcaaa |
99 |
Q |
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| T |
40749472 |
tactagagaatataagtgtgattgtggtacactcttctcaaggtaattcaattcacttttttttttagtataaaaaaatttaggtgactttggtttcaaa |
40749571 |
T |
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| Q |
100 |
gaccaaagtcatgcaaatttaaacattcaattccttcatactgattttttataaataaagaagtttctgaaaatttattgtttttgatgtggatgaaaaa |
199 |
Q |
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| T |
40749572 |
gaccaaagtcatgcaaatttaaacattcaattccttcatactgattttttataaataaagaagtttctgaaaatttcttgtttttgatgtggatgaaaaa |
40749671 |
T |
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| Q |
200 |
actgtttttcttttcaattacttctcatttgcattatgtatgaatttaatgcatacttcctcataatttaattattcacaaattaagacaatgatctagt |
299 |
Q |
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| T |
40749672 |
actgtttttcttttcaattacttctcatttgcattatgtatgaatttaatgcatacttcctcataatttaattattcacaaattaagacaatgatctagt |
40749771 |
T |
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| Q |
300 |
actactgcatagtgtaaatgattaggtttctaatggtacattttatttcacaggaaggatagctttattacacacagagctttctgcgacgcattagccg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40749772 |
actactgcatagtgtaaatgattaggtttctaatggtacattttatttcacaggaaggatagctttattacacacagagctttctgcgacgcattagccg |
40749871 |
T |
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| Q |
400 |
tagaaagtgcaagacactcatctcctacaactctaaatt |
438 |
Q |
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| T |
40749872 |
tagaaagtgcaagacactcatctcctacaactctaaatt |
40749910 |
T |
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