View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10934_high_3 (Length: 403)

Name: NF10934_high_3
Description: NF10934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10934_high_3
NF10934_high_3
[»] chr6 (3 HSPs)
chr6 (18-391)||(34374196-34374567)
chr6 (179-281)||(11191585-11191687)
chr6 (201-262)||(10084610-10084671)
[»] chr4 (1 HSPs)
chr4 (183-390)||(10494392-10494599)
[»] chr8 (2 HSPs)
chr8 (19-178)||(40159256-40159411)
chr8 (166-374)||(2688632-2688833)
[»] chr7 (2 HSPs)
chr7 (176-390)||(11228124-11228337)
chr7 (315-379)||(1217631-1217695)
[»] chr2 (2 HSPs)
chr2 (180-390)||(32162376-32162589)
chr2 (321-390)||(280423-280492)
[»] scaffold0024 (2 HSPs)
scaffold0024 (295-388)||(145312-145405)
scaffold0024 (295-390)||(144317-144412)
[»] chr1 (3 HSPs)
chr1 (298-390)||(40805442-40805534)
chr1 (299-390)||(31915122-31915213)
chr1 (301-390)||(13442049-13442141)
[»] chr3 (3 HSPs)
chr3 (218-340)||(3064194-3064316)
chr3 (285-390)||(8536793-8536898)
chr3 (321-390)||(43304345-43304414)
[»] chr5 (2 HSPs)
chr5 (285-390)||(18251990-18252095)
chr5 (176-260)||(18251855-18251939)
[»] scaffold0054 (1 HSPs)
scaffold0054 (353-386)||(48954-48987)


Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 34374567 - 34374196
Alignment:
Q  18 cacgcacatcatggcttaatcatttacagagtggctccaatttgcatcggcaatcttcaccaagtaacatggcatgcttcggcagaaaacgtcaacattt 117  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||     ||| |||| ||||| ||| |||||    
T  34374567 cacgcacatcatggcttaatcatatacggagtggctccaatttgcatcggcaatcttcaccaagtaacatg-----ctttggcacaaaacatcatcattt 34374473  T
Q  118 gttaatggttctctagaccttcctcagatgccaaactttgctagaacaccgcctcatatgccgaagaaaccaccggatcgacgtgttgctacagatatcg 217  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34374472 gttaatggttctctaggccttcctcagatgccaaactttgctagaacaccgcctcatatgccgaagaaaccaccggatcgacgtgttgctacagatatcg 34374373  T
Q  218 accaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatttagtactatgattaaagtcgaggctaaaatgatggatctaga 317  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  34374372 accaaccatctgattatattactttacaaaaatttacaccactcagtgaattgtcatttagtactatgattaaagtcgaggttaaaatgatggatctata 34374273  T
Q  318 atgtattcagcatgctactacattttcttaatggtataaaggcaactgct---atatttttcaaatcaaaccatctc 391  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||| |    |||||||||||||||||||||||    
T  34374272 atgtatccagcatgctactacattttctcaatggtataaaggcaactgatgtattatttttcaaatcaaaccatctc 34374196  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 11191585 - 11191687
Alignment:
Q  179 cgaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatttag 278  Q
    ||||||||||||||||||||  ||||| || || ||||||||||  |||||||||||||| ||||||||||||  ||||||||| ||| | ||||| |||    
T  11191585 cgaagaaaccaccggatcgatatgttgttatagttatcgaccaacaatctgattatgttattttacaaaaattgtcaccactcatggattggtcatctag 11191684  T
Q  279 tac 281  Q
    |||    
T  11191685 tac 11191687  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 10084610 - 10084671
Alignment:
Q  201 tgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactca 262  Q
    ||||| ||||| |||||||||| ||| ||||||||||| ||||||||||||  |||||||||    
T  10084610 tgttgttacaggtatcgaccaaccatttgattatgttattttacaaaaattgtcaccactca 10084671  T

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Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 183 - 390
Target Start/End: Original strand, 10494392 - 10494599
Alignment:
Q  183 gaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatttagtact 282  Q
    |||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| |||||||||| ||| | ||||| ||||||     
T  10494392 gaaaccactggatcgacgtgttgctataggtatcgaccaaccatctgattatgttactttacaaaaattcacaccactcacggattggtcatctagtacc 10494491  T
Q  283 atgattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatca 382  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||  | ||||| |||| |||||||||||||||||| ||| ||    
T  10494492 atgattaaagtcgaggctaaaatgatggatctagaaagtactcagcatgcttctacatttcttcaatgggataagggcaactgctatattttttaaacca 10494591  T
Q  383 aaccatct 390  Q
    ||| ||||    
T  10494592 aactatct 10494599  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 40159411 - 40159256
Alignment:
Q  19 acgcacatcatgg-cttaatcatttacagagtggctccaatttgcatcggcaatcttcaccaagtaacatggcatgcttcggcagaaaacgtcaacattt 117  Q
    ||||||||||||| ||||||||| ||  |||||||||||||||||||| ||||||||||||||||||||||     ||| ||||||||||| || | |||    
T  40159411 acgcacatcatggacttaatcatatatggagtggctccaatttgcatcagcaatcttcaccaagtaacatg-----ctttggcagaaaacgccatcgttt 40159317  T
Q  118 gttaatggttctctagaccttcctcagatgccaaactttgctagaacaccgcctcatatgc 178  Q
    ||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||||||||    
T  40159316 gttaatggttctccaggccttcctcagatgtcaagctttgctagaacaccgcctcatatgc 40159256  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 166 - 374
Target Start/End: Original strand, 2688632 - 2688833
Alignment:
Q  166 ccgcctcatatgccgaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcaggg 265  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||       ||||||||  |    
T  2688632 ccgccgcagatgccgaagaaaccactggatcgacgtgttgctacagatatcgaccaaccatacgattatgttactttacaaa-------accactcacag 2688724  T
Q  266 aattgtcatttagtactatgattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactg 365  Q
    | | ||||| ||| || | ||||| |||||||||||||||||||||||||||| ||||||| ||||| |||| || |  | ||||| ||||||||||||     
T  2688725 attggtcatctagaaccacgattatagtcgaggctaaaatgatggatctagaaagtattcaacatgcaactatatctcttcaatgggataaaggcaacta 2688824  T
Q  366 ctatatttt 374  Q
    |||||||||    
T  2688825 ctatatttt 2688833  T

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Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 176 - 390
Target Start/End: Original strand, 11228124 - 11228337
Alignment:
Q  176 tgccgaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatt 275  Q
    |||||||||||||||  ||| || |||||||||||  |||||||| | | ||||||||  |||||||||||||||| |||||||||| |||  ||||||     
T  11228124 tgccgaagaaaccactagattgatgtgttgctacaagtatcgacccaccctctgattacattactttacaaaaattcacaccactcaaggatgtgtcatc 11228223  T
Q  276 tagtactatgattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatattttt 375  Q
    |||||    |||||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||  | ||||| |||||||||||| ||| | ||||    
T  11228224 tagtatccggattaaagtcaaggctaaaatgatggatctagaaagtatttagcatggtactacatttattcaatggcataaaggcaacttctaca-tttt 11228322  T
Q  376 caaatcaaaccatct 390  Q
    |||| ||||||||||    
T  11228323 caaaacaaaccatct 11228337  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 1217695 - 1217631
Alignment:
Q  315 agaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaa 379  Q
    |||| |||||| ||||| |||||||||| || ||||| |||||||||||||||||||||||||||    
T  1217695 agaaagtattcggcatgatactacatttcctcaatgggataaaggcaactgctatatttttcaaa 1217631  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 390
Target Start/End: Complemental strand, 32162589 - 32162376
Alignment:
Q  180 gaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatttagt 279  Q
    ||||||||||  |||||||||||||| || || |||| ||||| ||||||||||||||| |||||| |||||  ||| ||||| ||| | ||||| ||||    
T  32162589 gaagaaaccattggatcgacgtgttgttataggtatcaaccaaccatctgattatgttaatttacagaaattcccactactcatggattggtcatctagt 32162490  T
Q  280 actatgattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttctt----aatggtataaaggcaactgctatattttt 375  Q
    |||| |||||||||| ||| ||||||||| | |||| ||  |||||||||||||||||||||| |||    ||||| |||||||||||| |||||||||     
T  32162489 actacgattaaagtctaggttaaaatgattggtctataagttattcagcatgctactacattt-cttcaaaaatggcataaaggcaactactatattttc 32162391  T
Q  376 caaatcaaaccatct 390  Q
    |||| ||||||||||    
T  32162390 caaagcaaaccatct 32162376  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 280492 - 280423
Alignment:
Q  321 tattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaaccatct 390  Q
    ||||||||||||||||||||||  | ||||| ||||| |||||||||||||||| |||||||||||||||    
T  280492 tattcagcatgctactacatttcttcaatggcataaaagcaactgctatattttccaaatcaaaccatct 280423  T

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Target: scaffold0024 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 295 - 388
Target Start/End: Original strand, 145312 - 145405
Alignment:
Q  295 gaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaaccat 388  Q
    |||||||||||||||||| ||||  |||||| |||||||| |||||||  ||||||| ||||||||||||||||||||||||||||||||||||    
T  145312 gaggctaaaatgatggatttagagcgtattcggcatgctattacatttctttaatgggataaaggcaactgctatatttttcaaatcaaaccat 145405  T

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Target: scaffold0024; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 144412 - 144317
Alignment:
Q  295 gaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaaccatct 390  Q
    |||||||||||||||||| ||||  |||||| ||||||||||||||||  | ||||| |||||||||||| |||||||||||||||||||||||||    
T  144412 gaggctaaaatgatggatttagagcgtattcggcatgctactacatttcttcaatgggataaaggcaactactatatttttcaaatcaaaccatct 144317  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 40805442 - 40805534
Alignment:
Q  298 gctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaaccatct 390  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  | ||||| |||||| ||||||||||||| | ||||||||| |||||    
T  40805442 gctaaaatgatggatttagaatgtattcagcatgctactacatttcttcaatgggataaagacaactgctatattctccaaatcaaatcatct 40805534  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 31915122 - 31915213
Alignment:
Q  299 ctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaaccatct 390  Q
    ||||||||||||||||||||  |||||||||||||||| |||||  | ||||| |||||||||||  | ||||||| |||| ||||||||||    
T  31915122 ctaaaatgatggatctagaaaatattcagcatgctactgcatttcttcaatgggataaaggcaacatcaatattttacaaaccaaaccatct 31915213  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 390
Target Start/End: Complemental strand, 13442141 - 13442049
Alignment:
Q  301 aaaatgatggatctagaatgtattcagcatgct---actacattttcttaatggtataaaggcaactgctatatttttcaaatcaaaccatct 390  Q
    |||||||||||||||||| ||||||  ||||||   |||||||||  | ||||||||||||| ||||| | ||||||||||| ||||| ||||    
T  13442141 aaaatgatggatctagaaagtattcgacatgctgctactacatttcttcaatggtataaaggaaactgttttatttttcaaaccaaactatct 13442049  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 340
Target Start/End: Complemental strand, 3064316 - 3064194
Alignment:
Q  218 accaatcatctgattatgttactttacaaaaatttacaccactcagggaattgtcatttagtactatgattaaagtcgaggctaaaatgatggatctaga 317  Q
    ||||| ||| ||||||||||||||||||||||||| ||| ||||| ||| | ||||  |||||| | ||||||| |||| ||||||||||||||||||||    
T  3064316 accaaccatttgattatgttactttacaaaaatttccacaactcaaggattggtcacctagtaccacgattaaattcgaagctaaaatgatggatctaga 3064217  T
Q  318 atgtattcagcatgctactacat 340  Q
    | |||||  | ||||||||||||    
T  3064216 aagtatttggtatgctactacat 3064194  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 390
Target Start/End: Complemental strand, 8536898 - 8536793
Alignment:
Q  285 gattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaa 384  Q
    ||||||| | |||||||||||||||||| ||||  |||||||||||| ||||| ||||  | ||||| |||||||||||||||||| |||| |||  |||    
T  8536898 gattaaatttgaggctaaaatgatggatttagagagtattcagcatgttactatatttcttcaatggcataaaggcaactgctatagtttttaaacgaaa 8536799  T
Q  385 ccatct 390  Q
    ||||||    
T  8536798 ccatct 8536793  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 43304414 - 43304345
Alignment:
Q  321 tattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaaccatct 390  Q
    ||||||||||||||||||||||  | || || |||||| |||||| ||||||||||||| ||||| ||||    
T  43304414 tattcagcatgctactacatttcttcaacggaataaagtcaactgttatatttttcaaaccaaacaatct 43304345  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 390
Target Start/End: Original strand, 18251990 - 18252095
Alignment:
Q  285 gattaaagtcgaggctaaaatgatggatctagaatgtattcagcatgctactacattttcttaatggtataaaggcaactgctatatttttcaaatcaaa 384  Q
    |||||||||||||||||||||||||||||| ||  ||||||   ||||||||||||||  | ||| | ||||||  ||||||||||||||||||| ||||    
T  18251990 gattaaagtcgaggctaaaatgatggatctggatagtattcgaaatgctactacatttattcaataggataaagaaaactgctatatttttcaaaccaaa 18252089  T
Q  385 ccatct 390  Q
    ||||||    
T  18252090 ccatct 18252095  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 18251855 - 18251939
Alignment:
Q  176 tgccgaagaaaccaccggatcgacgtgttgctacagatatcgaccaatcatctgattatgttactttacaaaaatttacaccact 260  Q
    |||| |||||||||| ||||||| ||| |||||||| |||| ||||| ||||||||||| ||||||||||||||||  |||||||    
T  18251855 tgccaaagaaaccactggatcgatgtgatgctacaggtatcaaccaaccatctgattatattactttacaaaaattcccaccact 18251939  T

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Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 386
Target Start/End: Original strand, 48954 - 48987
Alignment:
Q  353 ataaaggcaactgctatatttttcaaatcaaacc 386  Q
    ||||||||||||||||||||||||||| ||||||    
T  48954 ataaaggcaactgctatatttttcaaaccaaacc 48987  T

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