View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10934_high_4 (Length: 293)
Name: NF10934_high_4
Description: NF10934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10934_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 32403513 - 32403776
Alignment:
| Q |
20 |
atctgaatcgtagggttcatccttctcacatatcagaagattcaaaatcaccatttttcctctttcaaaatcacatgtcagaagaaaaagtggtttttga |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
32403513 |
atctgaatcgtagggttcatccttctcacatatcagaagattcaaaatcaccatttttcttctttcaaaatcacaagtcagaagaaaaagtggtttttga |
32403612 |
T |
|
| Q |
120 |
catttttcttgttattaatgtttaatattttaatactgttgggatttatgttattgtcttatcaccatttcaaagggctggatgagcagagtaagataaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
32403613 |
catttttcttgttattaatgtttaatattttaatattgttgggatttatgttattgtcttatcaccattccaaagggctggatgagcagagttagataaa |
32403712 |
T |
|
| Q |
220 |
gtatatatatgcacaaatgttgtgtgtctgaatcttgctccaaacaattgttgatgtttctgtg |
283 |
Q |
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| T |
32403713 |
gtgtatatatgcacaaatgttgtgtgtctgaatcttgctccaaacaattgttgatggttctgtg |
32403776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 12695846 - 12695596
Alignment:
| Q |
20 |
atctgaatcgtagggttcatccttctcacatatcagaagattcaaaatcaccatttttcctctttcaaaatcacatgtcagaagaaaaagtggtttttga |
119 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||| || |||||||||||||||||| |||||||| ||| |
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| T |
12695846 |
atctgaatcgtatggttcatcc--ctcacatatcagaagattcaaaatcgccatttttcttctttgaagatcacatgtcagaagaaagagtggtttatga |
12695749 |
T |
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| Q |
120 |
catttttcttgttattaatgtttaatattttaatactgttgggatttatgtta---ttgtcttatcaccatttcaaagggctggatgagcagagtaagat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||| ||||||| || |||||||||||||||||||||||| |
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| T |
12695748 |
catttttcttgttattaatgtttaatattttaatactatt-ggatttatgttattcttttcttagcaccattccagagggctggatgagcagagtaagat |
12695650 |
T |
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| Q |
217 |
aaagtatatatatgcacaaatgttgtgtgtctgaatcttgctccaaacaattgt |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12695649 |
aaagtatatatatgcacaaatgttgtgtgtctgaatcttgcaccaaacaattgt |
12695596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 48200375 - 48200121
Alignment:
| Q |
20 |
atctgaatcgtagggttcatccttctcacatatcagaagattcaaaatcaccatttttcctctttcaaaatcacatgtcagaagaaaaagtggtttttga |
119 |
Q |
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||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||||| ||||||||||||| |||||||| || |
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| T |
48200375 |
atctgaatcgttgggttcatccttc--acatgtcagaagattcaaaatcaccatttttcttaattcaaaatcaaatgtcagaagaaagagtggtttatgg |
48200278 |
T |
|
| Q |
120 |
catttttcttgttattaatgtttaatattttaatactgttgggatttatgttattgtcttatcaccatttcaaagggctggatgagcagagtaagataaa |
219 |
Q |
| |
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||||||||||||||| | ||||||||||||||||||| || |||||||||| || ||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
48200277 |
catttttcttgttataactgtttaatattttaatactatt-ggatttatgtcat--tcttatcacca-ttcaaagggctggatgagtagagtaagataaa |
48200182 |
T |
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| Q |
220 |
g--tatatatatgcacaaatgttgtgtgtctgaatcttgctccaaacaattgttgatgttt |
278 |
Q |
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| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
48200181 |
gtatatatatatgcacaaatgttgtgtgtctgaatcttgcaccaaacaattgttgctgttt |
48200121 |
T |
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