View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10934_high_5 (Length: 265)

Name: NF10934_high_5
Description: NF10934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10934_high_5
NF10934_high_5
[»] chr4 (8 HSPs)
chr4 (62-133)||(37466427-37466498)
chr4 (175-242)||(3187104-3187171)
chr4 (62-133)||(14799548-14799619)
chr4 (62-114)||(3186774-3186826)
chr4 (6-49)||(29947648-29947691)
chr4 (6-49)||(38115902-38115945)
chr4 (1-48)||(37465874-37465921)
chr4 (20-49)||(44504942-44504971)
[»] chr1 (3 HSPs)
chr1 (175-249)||(52801028-52801102)
chr1 (6-52)||(20727796-20727842)
chr1 (1-31)||(17480053-17480083)
[»] chr3 (5 HSPs)
chr3 (61-133)||(40923283-40923355)
chr3 (62-133)||(2734237-2734308)
chr3 (1-65)||(40925800-40925864)
chr3 (1-63)||(2736755-2736817)
chr3 (1-65)||(22126379-22126443)
[»] chr7 (9 HSPs)
chr7 (62-133)||(18887057-18887128)
chr7 (62-131)||(8362511-8362580)
chr7 (62-133)||(31419606-31419677)
chr7 (1-65)||(18887312-18887376)
chr7 (183-249)||(18886894-18886960)
chr7 (1-63)||(31422125-31422187)
chr7 (6-49)||(8363925-8363968)
chr7 (6-49)||(38871496-38871539)
chr7 (27-59)||(17264466-17264498)
[»] chr6 (4 HSPs)
chr6 (62-133)||(7171491-7171562)
chr6 (6-59)||(10894916-10894969)
chr6 (6-49)||(6807369-6807412)
chr6 (61-135)||(30798111-30798188)
[»] chr8 (5 HSPs)
chr8 (62-135)||(33361244-33361317)
chr8 (1-65)||(33363845-33363909)
chr8 (1-65)||(42809783-42809847)
chr8 (62-135)||(43340850-43340926)
chr8 (1-39)||(43916868-43916906)
[»] chr5 (6 HSPs)
chr5 (62-133)||(22272728-22272799)
chr5 (1-65)||(22270219-22270283)
chr5 (69-133)||(18739178-18739242)
chr5 (6-58)||(29086353-29086405)
chr5 (62-126)||(7295319-7295386)
chr5 (62-90)||(22776361-22776389)
[»] scaffold0005 (1 HSPs)
scaffold0005 (62-133)||(40108-40179)
[»] chr2 (3 HSPs)
chr2 (61-135)||(43904342-43904419)
chr2 (62-122)||(5086345-5086408)
chr2 (62-122)||(43327628-43327691)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 37466427 - 37466498
Alignment:
Q  62 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaacggccttcctcttgaaaatagaatc 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37466427 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaacggccttcctcttgaaaatagaatc 37466498  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 3187104 - 3187171
Alignment:
Q  175 tttaaccatttatttgtacatctcccatttccatgagaagttaaagaacattaaacattataaaacaa 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3187104 tttaaccatttatttgtacatctcccatttccatgagaagttaaagaacattaaacattataaaacaa 3187171  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 14799548 - 14799619
Alignment:
Q  62 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaacggccttcctcttgaaaatagaatc 133  Q
    ||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14799548 ttcaggttcagatgaagaaactataacttcatctttttgaatatcaacggccttcctcttgaaaatagaatc 14799619  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 3186774 - 3186826
Alignment:
Q  62 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaacggcct 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3186774 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaacggcct 3186826  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 29947691 - 29947648
Alignment:
Q  6 tttggggtggccgtcatcccgccatcaaaataaattaaaatata 49  Q
    ||||||||||||| |||||||||||||||||||| |||||||||    
T  29947691 tttggggtggccgccatcccgccatcaaaataaaataaaatata 29947648  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 38115945 - 38115902
Alignment:
Q  6 tttggggtggccgtcatcccgccatcaaaataaattaaaatata 49  Q
    ||||||||||||| |||||||||||||||||||| |||||||||    
T  38115945 tttggggtggccggcatcccgccatcaaaataaaataaaatata 38115902  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 37465874 - 37465921
Alignment:
Q  1 aaatatttggggtggccgtcatcccgccatcaaaataaattaaaatat 48  Q
    |||| ||||||||||||||||| ||||||||||| |||| ||||||||    
T  37465874 aaatgtttggggtggccgtcatgccgccatcaaagtaaactaaaatat 37465921  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 44504971 - 44504942
Alignment:
Q  20 catcccgccatcaaaataaattaaaatata 49  Q
    ||||||||||||||||||||||||||||||    
T  44504971 catcccgccatcaaaataaattaaaatata 44504942  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 52801028 - 52801102
Alignment:
Q  175 tttaaccatttatttgtacatctcccatttccatgagaagttaaagaacattaaacattataaaacaacattagt 249  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52801028 tttaaccatttatttgtacatcttccatttccatgagaagttaaagaacattaaacattataaaacaacattagt 52801102  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 20727842 - 20727796
Alignment:
Q  6 tttggggtggccgtcatcccgccatcaaaataaattaaaatataata 52  Q
    ||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  20727842 tttggggtggccgccatcccgccatcaaaataaaataaaataaaata 20727796  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 17480053 - 17480083
Alignment:
Q  1 aaatatttggggtggccgtcatcccgccatc 31  Q
    |||||||||||||||||||||||||||||||    
T  17480053 aaatatttggggtggccgtcatcccgccatc 17480083  T

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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 40923355 - 40923283
Alignment:
Q  61 attcaggttcggatgaagaaattataacttcatctctttgaatatcaacggccttcctcttgaaaatagaatc 133  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40923355 attcaggttcggatgaagaaattataacttcatctttttgaatatcaacggccttcctcttgaaaatagaatc 40923283  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 2734308 - 2734237
Alignment:
Q  62 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaacggccttcctcttgaaaatagaatc 133  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2734308 ttcaggttcggatgaagaaattataacttcatctttttgaatatcaacggccttcctcttgaaaatagaatc 2734237  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 40925864 - 40925800
Alignment:
Q  1 aaatatttggggtggccgtcatcccgccatcaaaataaattaaaatataatatataaatcattca 65  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40925864 aaatgtttggggtggccgtcatcccgccatcaaaataaactaaaatataatatataaatcattca 40925800  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2736817 - 2736755
Alignment:
Q  1 aaatatttggggtggccgtcatcccgccatcaaaataaattaaaatataatatataaatcatt 63  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2736817 aaatgtttggggtggccgtcatcccgccatcaaaataaactaaaatataatatataaatcatt 2736755  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22126379 - 22126443
Alignment:
Q  1 aaatatttggggtggccgtcatcccgccatcaaaataaattaaaatataatatataaatcattca 65  Q
    |||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  22126379 aaatgtttggggtggccgtcatgccgccatcaaaataaactaaaatataatatataaatcattca 22126443  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 18887128 - 18887057
Alignment:
Q  62 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaacggccttcctcttgaaaatagaatc 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18887128 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaacggccttcctcttgaaaatataatc 18887057  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 8362580 - 8362511
Alignment:
Q  62 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaacggccttcctcttgaaaatagaa 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8362580 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaatggccttcctcttgaaaatagaa 8362511  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 31419677 - 31419606
Alignment:
Q  62 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaacggccttcctcttgaaaatagaatc 133  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  31419677 ttcaggttcggatgaagaaattataacttcatctttttgaatatcaaaggccttcctcttgaaaatagaatc 31419606  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 18887376 - 18887312
Alignment:
Q  1 aaatatttggggtggccgtcatcccgccatcaaaataaattaaaatataatatataaatcattca 65  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18887376 aaatatttggggtggccgtcatcccgccatcaaaataaactaaaatataatatataaatcattca 18887312  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 18886960 - 18886894
Alignment:
Q  183 tttatttgtacatctcccatttccatgagaagttaaagaacattaaacattataaaacaacattagt 249  Q
    ||||||||| ||||||||| || |||||||| |||||||||| ||||||||||||||||||||||||    
T  18886960 tttatttgtgcatctcccacttgcatgagaatttaaagaacactaaacattataaaacaacattagt 18886894  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31422187 - 31422125
Alignment:
Q  1 aaatatttggggtggccgtcatcccgccatcaaaataaattaaaatataatatataaatcatt 63  Q
    |||| |||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  31422187 aaatgtttgggatggccatcatcccgccatcaaaataaactaaaatataatatataaatcatt 31422125  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 8363968 - 8363925
Alignment:
Q  6 tttggggtggccgtcatcccgccatcaaaataaattaaaatata 49  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||    
T  8363968 tttggggtggccgccatctcgccatcaaaataaactaaaatata 8363925  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 38871496 - 38871539
Alignment:
Q  6 tttggggtggccgtcatcccgccatcaaaataaattaaaatata 49  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||    
T  38871496 tttggagtggccgccatcccgccatcaaaataaaataaaatata 38871539  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 17264466 - 17264498
Alignment:
Q  27 ccatcaaaataaattaaaatataatatataaat 59  Q
    ||||||||||||| |||||||||||||||||||    
T  17264466 ccatcaaaataaactaaaatataatatataaat 17264498  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 7171562 - 7171491
Alignment:
Q  62 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaacggccttcctcttgaaaatagaatc 133  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7171562 ttcaggttcggatgaagaaattataacttcatctttttgaatatcaacggccttcctcttgaaaatagaatc 7171491  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 10894916 - 10894969
Alignment:
Q  6 tttggggtggccgtcatcccgccatcaaaataaattaaaatataatatataaat 59  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  10894916 tttggggtggccgccatcccgccatcaaaataaactaaaatataatatataaat 10894969  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 6807412 - 6807369
Alignment:
Q  6 tttggggtggccgtcatcccgccatcaaaataaattaaaatata 49  Q
    ||||||||||||| |||||||||||||||||||| |||||||||    
T  6807412 tttggggtggccgccatcccgccatcaaaataaaataaaatata 6807369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 30798188 - 30798111
Alignment:
Q  61 attcaggttcggatgaagaaattataa---cttcatctctttgaatatcaacggccttcctcttgaaaatagaatcaa 135  Q
    ||||| |||||||||||||||||||||   ||||||||||||  |||||| || |||||||||| ||||  |||||||    
T  30798188 attcaagttcggatgaagaaattataactccttcatctctttcgatatcatcgaccttcctcttaaaaaaggaatcaa 30798111  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 33361317 - 33361244
Alignment:
Q  62 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaacggccttcctcttgaaaatagaatcaa 135  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33361317 ttcaagttcggatgaagaaattataacttcatctctttgaatatcaacgaccttcctcttgaaaatagaatcaa 33361244  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33363909 - 33363845
Alignment:
Q  1 aaatatttggggtggccgtcatcccgccatcaaaataaattaaaatataatatataaatcattca 65  Q
    |||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  33363909 aaatgtttggggtggccgtcatgccgccatcaaaataaactaaaatataatatataaatcattca 33363845  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 42809847 - 42809783
Alignment:
Q  1 aaatatttggggtggccgtcatcccgccatcaaaataaattaaaatataatatataaatcattca 65  Q
    |||| ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||    
T  42809847 aaatgtttggggtggccgtcattccgccatcaaaataaactaaaatgtaatatataaatcattca 42809783  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 43340850 - 43340926
Alignment:
Q  62 ttcaggttcggatgaagaaattataa---cttcatctctttgaatatcaacggccttcctcttgaaaatagaatcaa 135  Q
    ||||||||||||||||||||||||||   ||||||||||||  |||||| |  |||||||||| ||||  |||||||    
T  43340850 ttcaggttcggatgaagaaattataacttcttcatctctttcgatatcatcaaccttcctcttaaaaaaggaatcaa 43340926  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 43916906 - 43916868
Alignment:
Q  1 aaatatttggggtggccgtcatcccgccatcaaaataaa 39  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  43916906 aaatatttggggtggccgccatcctgccatcaaaataaa 43916868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 22272728 - 22272799
Alignment:
Q  62 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaacggccttcctcttgaaaatagaatc 133  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  22272728 ttcaggttcggatgaagaaattataacttcatctttttgaatatcaacggccttcctcttgaaaatataatc 22272799  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22270219 - 22270283
Alignment:
Q  1 aaatatttggggtggccgtcatcccgccatcaaaataaattaaaatataatatataaatcattca 65  Q
    |||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  22270219 aaatgtttggggtggccgttatcccgccatcaaaataaactaaaatataatatataaatcattca 22270283  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 18739178 - 18739242
Alignment:
Q  69 tcggatgaagaaattataacttcatctctttgaatatcaacggccttcctcttgaaaatagaatc 133  Q
    |||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||||||||||    
T  18739178 tcggatgaagaaattacaacttcatctctttcaatatcaacagccttccttttgaaaatagaatc 18739242  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 29086405 - 29086353
Alignment:
Q  6 tttggggtggccgtcatcccgccatcaaaataaattaaaatataatatataaa 58  Q
    |||||||||||||||||||||||||||||||||| || ||| |||||||||||    
T  29086405 tttggggtggccgtcatcccgccatcaaaataaactataatgtaatatataaa 29086353  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 7295386 - 7295319
Alignment:
Q  62 ttcaggttcggatgaagaaattataa---cttcatctctttgaatatcaacggccttcctcttgaaaa 126  Q
    ||||||||||||||||||||||||||   ||||||||||||  |||||| || |||||||||| ||||    
T  7295386 ttcaggttcggatgaagaaattataacttcttcatctctttcgatatcatcgaccttcctcttaaaaa 7295319  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 22776389 - 22776361
Alignment:
Q  62 ttcaggttcggatgaagaaattataactt 90  Q
    |||||||||||||||||||||||||||||    
T  22776389 ttcaggttcggatgaagaaattataactt 22776361  T

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Target: scaffold0005 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 40179 - 40108
Alignment:
Q  62 ttcaggttcggatgaagaaattataacttcatctctttgaatatcaacggccttcctcttgaaaatagaatc 133  Q
    ||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40179 ttcaggttcagatgaagaaactataacttcatctttttgaatatcaacggccttcctcttgaaaatagaatc 40108  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 43904342 - 43904419
Alignment:
Q  61 attcaggttcggatgaagaaattataa---cttcatctctttgaatatcaacggccttcctcttgaaaatagaatcaa 135  Q
    |||||||||||||||||||||||||||   ||||||||||||  |||||| || |||||||||| ||||  |||||||    
T  43904342 attcaggttcggatgaagaaattataacttcttcatctctttcgatatcatcgaccttcctcttaaaaaaggaatcaa 43904419  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 5086408 - 5086345
Alignment:
Q  62 ttcaggttcggatgaagaaattataacttc---atctctttgaatatcaacggccttcctcttg 122  Q
    |||| |||| ||||||||||||||||||||   |||| ||| ||||||| ||||||||||||||    
T  5086408 ttcaagttcagatgaagaaattataacttcttcatctttttcaatatcatcggccttcctcttg 5086345  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 43327691 - 43327628
Alignment:
Q  62 ttcaggttcggatgaagaaattataacttc---atctctttgaatatcaacggccttcctcttg 122  Q
    |||| |||| ||||||||||||||||||||   |||| ||| ||||||| ||||||||||||||    
T  43327691 ttcaagttcagatgaagaaattataacttcttcatctttttcaatatcatcggccttcctcttg 43327628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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