View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10934_low_1 (Length: 826)
Name: NF10934_low_1
Description: NF10934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10934_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 576; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 19 - 618
Target Start/End: Complemental strand, 19474914 - 19474315
Alignment:
| Q |
19 |
gatcttttcaatgaagttaaggttgattgatgaagttccttgcagtcttgaattgatcctcgttgtttctctacgatattcgatgttccaacgtcgtgga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19474914 |
gatcttttcaatgaagttaaggttgattgatgaagttccttgcagtcttgaattgatcctcgttgtttctctacgatattcgatgttccaacgtcgtgga |
19474815 |
T |
|
| Q |
119 |
aaagattcgagagctttgtggtttcggatattgctagttgaagtgaatgaagaaggtaggttatgatgtttgggtttatgtttatggatatggaaagttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19474814 |
aaagattcgagagctttgtggtttcggatattgctagttgaagtgaatgaagaaggtaggttatgatgtttgggtttatgtttatggatatggaaagttt |
19474715 |
T |
|
| Q |
219 |
taatgagttgaaacaaagtttagggtatggtgttgttttgcataaagattttaaggaagtgagtttgttgggatttagtgatgtggttatggaagtgttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19474714 |
taatgagttgaaacaaagtttagggtatggtgttgttttgcataaagattttaaggaagtgagtttgttgggatttagtgatgtggttatggaagtgttg |
19474615 |
T |
|
| Q |
319 |
atgttgagaggtaatgtgagtgagaagaggattataaagagaaggatgaagagtttgtgagatgaggaagccatgaaatgttgatgaaaaagttagggaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19474614 |
gtgttgagaggtaatgtgagtgagaagaggattgtaaagagaaggatgaagagtttgtgagatgaggaagccatgaaatgttgatgaaaaagttagggaa |
19474515 |
T |
|
| Q |
419 |
gaagttgagaatctaactttgtttaaataatgtactttaggtttagatagagacatttattagaatctaaaataacacgggtttggaacttaaataaatt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19474514 |
gaagttgagaatctaactttgtttaaataatgtactttaggtttcgatagagacatttattagaatctaaaataacacgggtttggaacttaaataaatt |
19474415 |
T |
|
| Q |
519 |
actttttgaaaaggtcaataatatagcagcttgtaattttaaactttatatttctccctctagaggaaaagagttgcacctagtactttgaattttaacc |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19474414 |
actttttgaaaaggtcaataatatagcagcttgtaattttaaactttatatttccccgtctagaggaaaagagttgcacctagtattttgaattttaacc |
19474315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 644 - 813
Target Start/End: Complemental strand, 19474296 - 19474127
Alignment:
| Q |
644 |
tagatgttaaatgagtttaaatctcattccacttacctaaggattacaactttgcgacacgtctttggtaagctattggctttaccgacttatcgttctt |
743 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19474296 |
tagatgttaaatgagtttaaatctcattccacttacctcataattgcaactttgcgacacgtctttggtaagctattggctttaccaacttatcgttctt |
19474197 |
T |
|
| Q |
744 |
tcaaggggattatctttatgtttggctgcatcgtggcattgatggtcattctagatttctgttgatgtcc |
813 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
19474196 |
tcaaggggatgatctttatgtttggctgcgtcgtggtattgatggtcattctagatttctgtttatgtcc |
19474127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 812
Target Start/End: Original strand, 25785853 - 25785916
Alignment:
| Q |
749 |
gggattatctttatgtttggctgcatcgtggcattgatggtcattctagatttctgttgatgtc |
812 |
Q |
| |
|
||||| |||||||||||||||||| |||||| ||||||||| | ||||| ||| |||| ||||| |
|
|
| T |
25785853 |
gggatgatctttatgtttggctgcgtcgtggtattgatggtaaatctagctttttgtttatgtc |
25785916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 694 - 814
Target Start/End: Original strand, 3941511 - 3941632
Alignment:
| Q |
694 |
tttgcgacacgtctttggtaagctattggctttaccgacttatcgttctttcaaggggattatctttatgtttggctgc-atcgtggcattgatggtcat |
792 |
Q |
| |
|
|||||||| |||| |||| || |||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||| | |||| |||||||| ||| |
|
|
| T |
3941511 |
tttgcgactcgtccttggcaaactattggctttaccgacttatctttcttccaaaggaattatctttatgtttggctgcgtttgtggtattgatggccat |
3941610 |
T |
|
| Q |
793 |
tctagatttctgttgatgtcca |
814 |
Q |
| |
|
||||||||||| || ||||||| |
|
|
| T |
3941611 |
tctagatttctttttatgtcca |
3941632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 51546918 - 51546810
Alignment:
| Q |
122 |
gattcgagagctttgtggtttcggatattgctagttgaagtgaatgaagaaggtaggttatgatgtttgggtttatgtttatggatatggaaagttttaa |
221 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| || ||| || |||||||||||| | | ||||||||||| ||||||| ||| || ||||| |||||| | |
|
|
| T |
51546918 |
gattagagagctttgtggtttcagatattgatacttggagggaatgaagaaggatgttaatgatgtttggatttatgtctattgagatggagagttttga |
51546819 |
T |
|
| Q |
222 |
tgagttgaa |
230 |
Q |
| |
|
||| ||||| |
|
|
| T |
51546818 |
tgaattgaa |
51546810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 739 - 813
Target Start/End: Complemental strand, 33172855 - 33172781
Alignment:
| Q |
739 |
ttctttcaaggggattatctttatgtttggctgcatcgtggcattgatggtcattctagatttctgttgatgtcc |
813 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| | ||||| |||||||| |||| |||||||||||| |||||| |
|
|
| T |
33172855 |
ttctttcaaggggatgatctttatgttcggcttccgcgtggtattgatggccattttagatttctgtttatgtcc |
33172781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University