View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10934_low_2 (Length: 458)
Name: NF10934_low_2
Description: NF10934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10934_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 194 - 441
Target Start/End: Complemental strand, 34851485 - 34851238
Alignment:
| Q |
194 |
aaaaaggatgagaatgatggcactcacaacatggtggggttcagtggtcctttttcttggggaataattttcttgaccaccatagtagattgaagagctg |
293 |
Q |
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| T |
34851485 |
aaaaaggatgagaatgatggcactcacaacatggtggggttcagtggtcctgtttcttggggaataattttcttgaccaccatagtagattgaagagctg |
34851386 |
T |
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| Q |
294 |
tagtagctaggttccattgtctcattctgataattggtacaagtattcttgttataagagatgccatcactaggagtagtgcctaaaacgaatccaaaca |
393 |
Q |
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| T |
34851385 |
tagtagctaggttccattgtctcattctgataattggtacaagtatttttgttataagagatgccatcactaggagtagtgcctaaaacgaatccaaaca |
34851286 |
T |
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| Q |
394 |
taaacattactaaataaatgcagagatatttaaagtagtagtctatat |
441 |
Q |
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| T |
34851285 |
taaacattactaaataaatgcagagatatttaaagcagtagtctatat |
34851238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 34851650 - 34851473
Alignment:
| Q |
1 |
tcttaataaaaattataaagtcaactcgtgacataatattcttagaatttaatttagttattaagtaagtttcaaacatttcattagatctcatcattta |
100 |
Q |
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| T |
34851650 |
tcttaataaaaattataaagtcaactcgtgacataatattcttagaatttaatttagttattaagtaagtttcaaacatttcattagatctcatcattta |
34851551 |
T |
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| Q |
101 |
caagatatttgaatatttttctaggaaggatataataaatttctcaggtacttaaacgagggctgaaaaaggatgaga |
178 |
Q |
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| T |
34851550 |
caagatatttgaatatttttctaggaaggatataataaattcctcaggtaattaaacgagggcttaaaaaggatgaga |
34851473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 3511696 - 3511619
Alignment:
| Q |
73 |
caaacatttcattagatctcatcatttacaagatatttgaatat-ttttctaggaaggatataataaatttctcaggt |
149 |
Q |
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| T |
3511696 |
caaacatttaattagatctcaccatttataagatgtttgtatatgttttctaggaaggatataataaattcctcaggt |
3511619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 429
Target Start/End: Original strand, 3652164 - 3652321
Alignment:
| Q |
269 |
accaccatagtagattgaagagctgtagtagctaggttccattgtctcattctgataattggtacaagtattcttgttataagagatgccatcactagga |
368 |
Q |
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| T |
3652164 |
accaccatagtggattgaagagctgaagtaggtgggttccaccgtctcattctgataatcggtactattagtattcttgttagagatg---tcactatta |
3652260 |
T |
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| Q |
369 |
gtagtgcctaaaacgaatccaaacataaacattactaaataaatgcagagatatttaaagt |
429 |
Q |
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| T |
3652261 |
ggagttcctaaaacaaatccaaacagaaacattacttaagaaatacatacatgtttaaagt |
3652321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 31120837 - 31120764
Alignment:
| Q |
257 |
ataattttcttgaccaccatagtagattgaagagctgtagta---gctaggttccattgtctcattctgataat |
327 |
Q |
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| T |
31120837 |
ataattttcttgaccaccataatagattgaggaactgtagtaattactgggctccactgtctcattctgataat |
31120764 |
T |
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