View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10934_low_9 (Length: 250)
Name: NF10934_low_9
Description: NF10934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10934_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 34851644 - 34851883
Alignment:
| Q |
1 |
attaagaatatgattcaaaatagccactagaaagatgattgttattattcacttttgcagttcaagaaagataagaatcatggtgatcacaatggtaaca |
100 |
Q |
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| T |
34851644 |
attaagaatatgattcaaaatagccactagaaagatgattgttattattcacttttgcagttcaagaaagataagaatcatggtgatcacaatggtaaca |
34851743 |
T |
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| Q |
101 |
attccagcagtgcttcaagaggggactggtgggaaggtaggactaggaaccataatttaatttattttggctaagaaaagttttcataattaaaaactag |
200 |
Q |
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| T |
34851744 |
attccagcagtgcttcaagaggggactggtgggaaggtaggactaggaaccataatttaatttattttggctaagaaaagttttcataattaaaaactag |
34851843 |
T |
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| Q |
201 |
atattaaaatatggccactatcattagtattatgcctttg |
240 |
Q |
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| T |
34851844 |
atattaaaaaatggccactatcattagtattatgtctttg |
34851883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 3651239 - 3651160
Alignment:
| Q |
60 |
gttcaagaaagataagaatcatggtgatcacaatggtaacaattccagcagtgcttcaagaggggactggtgggaaggta |
139 |
Q |
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| T |
3651239 |
gttcaagaaatatacgaataatggtgatctcaatggtaacaattcaaacagcgcttcaagaggcgactggtggcaaggta |
3651160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 3512532 - 3512626
Alignment:
| Q |
48 |
ttcacttttgcagttcaagaaagataagaatcatggtgatcacaatggtaacaattccagcagtgcttcaagaggggactggtgggaaggtagga |
142 |
Q |
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| T |
3512532 |
ttcacctttgtagtttaagaaagatacggataatgctgatctcaattgtaacaatcctaacagtgcttcaaggggagactggtggctaggtagga |
3512626 |
T |
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