View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10935_high_3 (Length: 394)
Name: NF10935_high_3
Description: NF10935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10935_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 40441658 - 40442022
Alignment:
| Q |
19 |
tgaagagcataattcttttgtctgatattttttgcctcttagtaagtgatttttgaagtgaatatgtgaatttggtgatctttaaattgagcagggtaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40441658 |
tgaagagcataattcttttgtctgatattttttgcctcttagtaagtgatttttgaagtgaatatgtgaatttggtgatctttaaattgagcagggtaag |
40441757 |
T |
|
| Q |
119 |
attaaataaatatagtactatttatttgatagaaaatatttatggcttccacnnnnnnnnnnnnnnnnnncagaattgttttcgcaaatcttatctggtg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40441758 |
attaaataaatatagtactatttatttgatagaaaatatttatggcttccactttttttttttttttt--cagaattgttttcgcaaatcttatctggtg |
40441855 |
T |
|
| Q |
219 |
gagcttaatacttaagtcacttttgatgaagattggaaatagaggagctttctatctgtgagtatgaggtatatgtaaatcaaatgctaataatgttatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40441856 |
gagcttaatacttaagtcacttttgatgaagattggaaatagaggagctttctatctgtgagtatgaggtatatgtaaatcaaatgctaataatgttatt |
40441955 |
T |
|
| Q |
319 |
gctccttggtcggtcatgcatagtcatctaactggtttatatcctgcattctggtaggtatctctgc |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40441956 |
gctccttggtcggtcatgcatagtcatctaactggtttatatcctgcattctggtaggtatctctgc |
40442022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University