View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10935_low_1 (Length: 536)
Name: NF10935_low_1
Description: NF10935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10935_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 108 - 398
Target Start/End: Original strand, 38314468 - 38314758
Alignment:
| Q |
108 |
tatttttctgtgaaagattcctcaatcccccataattcaaattcaaattgtatcaagttcttccctctctactttttaaaatttgaatctctcaaaccct |
207 |
Q |
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| T |
38314468 |
tatttttctgtgaaagattcctcaatcccccataattcaaattcaaattgtatcaagttcttccctctctactttttaaaatttgaatctctcaaaccct |
38314567 |
T |
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| Q |
208 |
tatctcattccagtctcttttcttccctcttctttctcctaaccaaggtgcaggagtattatatgtggattatattttgaaagcaatgaagcatttagtt |
307 |
Q |
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| T |
38314568 |
tatctcattccagtctcttttcttccctcttctttctcctaaccaaggtgcaggagtattatatgtggattatattttgaaagcaatgaagcatttagtt |
38314667 |
T |
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| Q |
308 |
attcaaacattttttctttctactatttttacttgccacactcttctaatcttaatttttgtttaatacatttcacttcttatgactaatt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38314668 |
attcaaacattttttctttctactatttttacttgccacactcttctaatcttaatttttgtttaatacatttcactttttatgactaatt |
38314758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 45479625 - 45479519
Alignment:
| Q |
4 |
catacattctatatttgacctactgctacttttttaggaatctttctttatactccttcaaaactgtacaacaaaaacaggttgtatgattcctcaactt |
103 |
Q |
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|||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45479625 |
catacattttatatttgagctactgctactttttcaggaatctttctttatactccttcaaaactgtacaacaaaaacaggttgtatgattcctcaactt |
45479526 |
T |
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| Q |
104 |
cacctat |
110 |
Q |
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| T |
45479525 |
cacctat |
45479519 |
T |
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