View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10935_low_2 (Length: 464)
Name: NF10935_low_2
Description: NF10935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10935_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 63 - 336
Target Start/End: Original strand, 12280248 - 12280522
Alignment:
| Q |
63 |
tcctattattgtttgatatatacatctgataattgcttcttannnnnnnnnnnnnnccttcttctgt-tagtgtacacatagtttattgccaattctata |
161 |
Q |
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| T |
12280248 |
tcctattattgtttgttatatacatctgataattgattcttatttttattttttttccttcttttgtctagtgtatacatagtttattgccaattctata |
12280347 |
T |
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| Q |
162 |
ctcccaaatttgtgtgtttgaaatgtttatttggaatttgaagtcactctctgcatgacataacatctttcatgattctttatctttcatgtataaacgg |
261 |
Q |
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| T |
12280348 |
ctcccaaatttgtgtctttcaaatgtttatttggaatttgaagtcactctctgcatgacataacatctttcatgattctttatctttcatgtataaactg |
12280447 |
T |
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| Q |
262 |
atatgtgtttgttaagtgtttaattaagttgttaatctatacaaggccttgatctggtatatctttcgaattact |
336 |
Q |
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| T |
12280448 |
atatgtgtttgttaagtgtttaattaagttgttaatctatacaaggccttgatctggtatatctttcgaattact |
12280522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 371 - 448
Target Start/End: Complemental strand, 27542898 - 27542822
Alignment:
| Q |
371 |
tactgactgtggttatgattgttgttttttgcagtcctgtatttacacacatggctggaagttcttcggtgtggaagg |
448 |
Q |
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| T |
27542898 |
tacttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaagg |
27542822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 376 - 448
Target Start/End: Complemental strand, 23258254 - 23258183
Alignment:
| Q |
376 |
actgtggttatgattgttgttttttgcagtcctgtatttacacacatggctggaagttcttcggtgtggaagg |
448 |
Q |
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| T |
23258254 |
actgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaagg |
23258183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 376 - 448
Target Start/End: Complemental strand, 23276132 - 23276061
Alignment:
| Q |
376 |
actgtggttatgattgttgttttttgcagtcctgtatttacacacatggctggaagttcttcggtgtggaagg |
448 |
Q |
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| T |
23276132 |
actgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaagg |
23276061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 378 - 448
Target Start/End: Original strand, 11136751 - 11136821
Alignment:
| Q |
378 |
tgtggttatgattgttgttttttgcagtcctgtatttacacacatggctggaagttcttcggtgtggaagg |
448 |
Q |
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| T |
11136751 |
tgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaagg |
11136821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 23258443 - 23258350
Alignment:
| Q |
154 |
attctatactcccaaatttgtgtgtttgaaatgtttatttggaatttgaagtcactctctgcatgacataacatctttcatgattctttatctt |
247 |
Q |
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| T |
23258443 |
attctatactcccaagtttgtgtcttcgagatgtttatttagaatttgaagtcactctcaacataacataagagctttcatgtttctttttctt |
23258350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 23276321 - 23276228
Alignment:
| Q |
154 |
attctatactcccaaatttgtgtgtttgaaatgtttatttggaatttgaagtcactctctgcatgacataacatctttcatgattctttatctt |
247 |
Q |
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| T |
23276321 |
attctatactcccaagtttgtgtcttcgagatgtttatttagaatttgaagtcactctcaacataacataagagctttcatgtttctttttctt |
23276228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 332 - 448
Target Start/End: Complemental strand, 8985519 - 8985400
Alignment:
| Q |
332 |
ttactgattgtagtgcaacttgagtagtaatcaaggaat----tactgactgtggttatgattgttgttttttgcagtcctgtatttacacacatggctg |
427 |
Q |
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| T |
8985519 |
ttactgattgtagtgcaatatgagaaataatcaaggaatattatacttactatgattatgatttttgtttttt-cagtcctgtatttacacacatggctg |
8985421 |
T |
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| Q |
428 |
gaagttcttcggtgtggaagg |
448 |
Q |
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| T |
8985420 |
gaagttcttcggtgtggaagg |
8985400 |
T |
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