View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10935_low_6 (Length: 264)
Name: NF10935_low_6
Description: NF10935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10935_low_6 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 8496873 - 8497119
Alignment:
| Q |
18 |
gtcattattccatctgcacttgacattgatcctgatagtaacatgcttgctgctgctgaagttgttgatgccattgccatagctgctggtggtagtggat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8496873 |
gtcattattccatctgcacttgacattgatcctgatagtaacatgcttgctgctgctgaagttgttgatgccattgccatagctgctggtggtagtggat |
8496972 |
T |
|
| Q |
118 |
ggttatgtgttccttcatatgttgttaccaatattgttttgtcctcggcacaacgttgaacctattaacnnnnnnncatcaataatcagctacctatctc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |
|
|
| T |
8496973 |
ggttatgtgttccttcatatgttgttaccaatattgttttgtcctcggcacaacgttgaacctattaacaaaaaaacatcaataattagcgacctatctc |
8497072 |
T |
|
| Q |
218 |
taatttcgccactaaatttagaaaaaacaatatttggactatttttt |
264 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8497073 |
taatttcgtcactaaatttagaaaaaacaatatttggactatttttt |
8497119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 37054175 - 37054088
Alignment:
| Q |
19 |
tcattattccatctgcacttgacattgatcctgatagtaacatgcttgctgctgctgaagttgttgatgccattgccatagctgctgg |
106 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||| || ||||| ||||| |||| ||| |||||| | ||||| ||||||||||||| |
|
|
| T |
37054175 |
tcattagtccatctgcacttgtcattggtcctgacagcaacattcttgcagctgatgatgttgtttgtaccatttccatagctgctgg |
37054088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 55365316 - 55365470
Alignment:
| Q |
27 |
ccatctgcacttgacattgatcctgatagtaacatgcttgctgctgctgaagttgttgatgccattgccatagctgctggtggtagtggatggttatgtg |
126 |
Q |
| |
|
||||| |||||||||||||| || |||||||||| | | || || |||| || || |||||||||| |||||| || ||||| ||||||||| |||||| |
|
|
| T |
55365316 |
ccatcagcacttgacattgacccagatagtaacacggtagcagcagctgcggtggtcgatgccattggcatagcagcaggtgggagtggatggctatgtg |
55365415 |
T |
|
| Q |
127 |
ttccttcatatgttgttaccaatattgttttgtcctcggcacaacgttgaaccta |
181 |
Q |
| |
|
| |||||||||||||||| ||| |||| | ||||||| ||||| ||||||||||| |
|
|
| T |
55365416 |
tcccttcatatgttgttatcaaaattgatctgtcctccgcacatcgttgaaccta |
55365470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 142
Target Start/End: Complemental strand, 37939609 - 37939575
Alignment:
| Q |
108 |
ggtagtggatggttatgtgttccttcatatgttgt |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
37939609 |
ggtagtggatggttatgtgttccttcatatgttgt |
37939575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 21194272 - 21194151
Alignment:
| Q |
27 |
ccatctgcacttgacattgatcctgatagtaacatgcttgctgctgctgaagttgttgatgccattgccatagctgctggtggtagtggatggttatgtg |
126 |
Q |
| |
|
|||||| |||||| ||||| |||||| |||| ||| |||||||| || ||||||||||||||||| | |||| ||||||||| | |||||||||| |
|
|
| T |
21194272 |
ccatctacacttgtcattggtcctgaaagtagcattgatgctgctgatgttgttgttgatgccattgcttttgctgttggtggtagagcatggttatgtt |
21194173 |
T |
|
| Q |
127 |
ttccttcatatgttgttaccaa |
148 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21194172 |
gtccttcatatgttgttaccaa |
21194151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University