View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10935_low_9 (Length: 250)
Name: NF10935_low_9
Description: NF10935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10935_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8497269 - 8497508
Alignment:
| Q |
1 |
ttggcatccatcacttatctgcaattatccatcacataattcagttagaaaactaatcaagagccttaatcaattttgatttatttagtagttaatgaat |
100 |
Q |
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| T |
8497269 |
ttggcatccatcacttatctgcaattatccatcatataattcagttagaaaactaatcaagagccttaatcaattttgatttatttagtagttaatgaat |
8497368 |
T |
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| Q |
101 |
gcataccattgaagcttctgatctagcacgaacggagacacgagcttttctcattgtagcttctgtatttgcttgatctgcaacattggaagagttcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8497369 |
gcataccattgaagcttctgatctagcacgaacggagacacgagcttttctcattgtagcttctgtatttgcttgatctgcaacattggaagagttcaat |
8497468 |
T |
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| Q |
201 |
attttctgagacttgtttggaccccagccttgtgtctctg |
240 |
Q |
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| T |
8497469 |
attttctgagacttgtttggaccccagccttgtgtttctg |
8497508 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 14009884 - 14009948
Alignment:
| Q |
114 |
gcttctgatctagcacgaacggagacacgagcttttctcattgtagcttctgtatttgcttgatc |
178 |
Q |
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| T |
14009884 |
gcttctgatctagcacggactgagactcgtgcttttctcatagtggcttctgcattggcttgatc |
14009948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 19614331 - 19614267
Alignment:
| Q |
114 |
gcttctgatctagcacgaacggagacacgagcttttctcattgtagcttctgtatttgcttgatc |
178 |
Q |
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| T |
19614331 |
gcttctgatctagcacggactgagactcgtgcttttctcatagtggcttctgcattggcttgatc |
19614267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 55365812 - 55365876
Alignment:
| Q |
114 |
gcttctgatctagcacgaacggagacacgagcttttctcattgtagcttctgtatttgcttgatc |
178 |
Q |
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||||||||||||||||| || ||||| || ||||||||||| || ||||||| ||| |||||||| |
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| T |
55365812 |
gcttctgatctagcacggactgagactcgtgcttttctcatagtggcttctgcattggcttgatc |
55365876 |
T |
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