View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10936_high_1 (Length: 678)
Name: NF10936_high_1
Description: NF10936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10936_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 17 - 659
Target Start/End: Original strand, 3425045 - 3425687
Alignment:
| Q |
17 |
agttttgatatattcaaaacctattgtcgcaacaccacaacgtttaagagccaaagggattgtttaatccgcaatcaatttgaaaatttcaggaattttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425045 |
agttttgatatattcaaaacctattgtcgcaacaccacaacgtttaagagccaaagggattgtttaatccgcaatcaatttgaaaatttcaggaattttt |
3425144 |
T |
|
| Q |
117 |
atttcagctatgttgtcaatagcacgctatagcggtgtagtttggcggcgctgccctccacttccgcaccataggcccgaaaagcgccattgagagtatc |
216 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425145 |
atttcagctatgttgccaatagcacgctatagcggtgtagtttggcagcgctgccctccacttccgcaccataggcccgaaaagcgccattgagagtatc |
3425244 |
T |
|
| Q |
217 |
atcactagcggcctatattagtggttaaaaagcagcgccattgcggcgctggtgctatcccggtaccgttgtgatttgatgtctgctattgcaattttag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3425245 |
atcactagcggcctatattagtggttaaaaagcagcgccattgcggcgctggtgctatcccggtaccgttgtgatttgatatctgctattgcaattttag |
3425344 |
T |
|
| Q |
317 |
ggaaaaattctcaaaaatcctgttaccgtatctttgagtttgagttctgtcattgttgccttgtattgaccatgaaaataaggaagttagtgtcattcac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425345 |
ggaaaaattctcaaaaatcctgttaccgtatctttgagtttgagttctgtcattgttgccttgtattgaccatgaaaataaggaagttagtgtcattcac |
3425444 |
T |
|
| Q |
417 |
agagataacttgtgtagcaagttatcttgttagttatccataattaactgtcatagctagaatcttgtatagcgtatctacaatagctatcatacacact |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425445 |
agagataacttgtgtagcaagttatcttgttagttatccataattaactgtcatagctagaatcttgtatagcgtatctacaatagctatcatacacact |
3425544 |
T |
|
| Q |
517 |
cttgtgccctataagacaaatatggtatgacttatgagagcctggttatgtcatcattgttctccatccttgctctatttctgtgcaaaagtttgcactg |
616 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425545 |
cttgtgtcctataagacaaatatggtatgacttatgagagcctggttatgtcatcattgttctccatccttgctctatttctgtgcaaaagtttgcactg |
3425644 |
T |
|
| Q |
617 |
tccatcctttctatttctgctcgagttcttttctggttcgttt |
659 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3425645 |
tccatcctttctatttctgctcgagttcttttttggttcgttt |
3425687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 9832993 - 9832953
Alignment:
| Q |
122 |
agctatgttgtcaatagcacgctatagcggtgtagtttggc |
162 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||| |
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| T |
9832993 |
agctatgttgtcaatagcacactatagcggtgtagtgtggc |
9832953 |
T |
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