View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10936_high_7 (Length: 330)
Name: NF10936_high_7
Description: NF10936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10936_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 7502609 - 7502906
Alignment:
| Q |
20 |
ggtgtctccgtaagctgaaatggaaagttctccaagaaggtttgctttcgacagagctaagcgaatgttgttagcaatggttttaacatactcggggttt |
119 |
Q |
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| T |
7502609 |
ggtgtctccgtaagctgaaatggaaagttctccaagaaggtttgctttcgacagagctaagcgaatgttgttagcaatggttttaacatactcggggttt |
7502708 |
T |
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| Q |
120 |
gttggaaatttacagtcgttaatgttccaccaaactgagatcttcgccttcacatgttccacatccatcttgaagggaagtctggttcgataggcgtgag |
219 |
Q |
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| T |
7502709 |
gttggaaatttacagtcgttaatgttccaccaaactgagatcttcgccttcacatgttccacatccatcttgaagggaagtctggttcgaaaggcgtgag |
7502808 |
T |
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| Q |
220 |
agaaatatcaaagtattgaattaaattacagataagaaacattactgaatgatcaagact-nnnnnnntagacatcattccaaaaacagtgatgtcca |
316 |
Q |
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| T |
7502809 |
agaaatatcaaagtattgaattaaattacagataagaaacattactgaatgatcaagactaaaaaaaatagacatcattccaaaaacagtgatatcca |
7502906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 7499275 - 7499477
Alignment:
| Q |
20 |
ggtgtctccgtaagctgaaatggaaagttctccaagaaggtttgctttcgacagagctaagcgaatgttgttagcaatggttttaacatactcggggttt |
119 |
Q |
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||||||||| ||||| | |||||||| ||| ||| |||| || |||||| |||| ||||| |||||||||||| |||| | |||| |||| ||||| |
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| T |
7499275 |
ggtgtctccataagccgtaatggaaatttcgccatgaagtttggctttcaacaggactaagggaatgttgttagaaatgttggtaacgctctcgaggttt |
7499374 |
T |
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| Q |
120 |
gttggaaatttacagtcgttaatgttccaccaaactgagatcttcgcc-ttcacatgttccacatccatcttgaagggaagtctggttcgataggcgtga |
218 |
Q |
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| T |
7499375 |
gttggaactttacagtcatcaatgttccaccaaactgagatcttcgcctttcacatattccacattcatttcgaa--gaagtctggttcgaaaggcgtga |
7499472 |
T |
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| Q |
219 |
gagaa |
223 |
Q |
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||||| |
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| T |
7499473 |
gagaa |
7499477 |
T |
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