View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10936_high_9 (Length: 249)
Name: NF10936_high_9
Description: NF10936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10936_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 28883512 - 28883750
Alignment:
| Q |
12 |
agagagagggaaaccaattctgttgcaatttatgaacaagaaataacgagatccggatacacgtttatgacagaagtgggccccatcgaaagtagca-at |
110 |
Q |
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| T |
28883512 |
agagagagggaaaccaattctgttgcaatttatgaacaagaaataacgagatccggatccacgtttattacagaagtgggccccatcgaaagtagcagat |
28883611 |
T |
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| Q |
111 |
ttcatttcaatttcaatctgcattgataaacaaaaccggaacagaattttccgtcaccgacgaagatgctgccaaatctccgatcccggcgacgcccccg |
210 |
Q |
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| T |
28883612 |
ttcatttcaatttcaatctgcattgataaacaaaaccgcaacagaattttccgtcaccgacgaagatgctgccaaatctccgatcccggcgacgcccccg |
28883711 |
T |
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| Q |
211 |
ttacggaggccttctatgtgccgttgtttcagcacttct |
249 |
Q |
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| T |
28883712 |
ttacggcagccttctatgcgctgtcgtttcagcacttct |
28883750 |
T |
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