View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10936_low_1 (Length: 700)

Name: NF10936_low_1
Description: NF10936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10936_low_1
NF10936_low_1
[»] chr4 (1 HSPs)
chr4 (10-689)||(10598818-10599491)


Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 10 - 689
Target Start/End: Original strand, 10598818 - 10599491
Alignment:
Q  10 gacatcattaggtttcacacctgttttgagcatatcatagaacaattctagtgcttttgtagcaaacccatgttttgcaaaaccatttatgatagaggtc 109  Q
    |||||||||||| |||||||||||||  ||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  10598818 gacatcattaggcttcacacctgtttcaagcatattatagaacaattctagtgcttttgaagcaaatccatgttttgcaaaaccatttatgatagaggtc 10598917  T
Q  110 caagttatgacattgcgatcttccatgtcattaaagacctgtaaagcagcttctttgtttccacacttagaatacatagagatcaaagcattattaacac 209  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10598918 caagttatgacattgcaatcttccatgtcattaaagacctgtaaagcagcttctttgtttccacacttggaatacatagagatcaaagcattattaacac 10599017  T
Q  210 ttaggtcagtccgaaatcccatcttcaccaccatggcatgaatttgttcacccttacctattgtaccaatacaagcagcaccactcaacaggctagcata 309  Q
    ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  10599018 ttaagtcagtccgaaatccaatcttaaccaccatggcatgaatttgttcacccttaccaattgtaccaatacaagcagcaccactcaagaggctagcata 10599117  T
Q  310 taaaaacgaactaactttgctactaccagtgtattcaatttcagggtttatgtcttgttcagaatttaaattcgaatctttcacacttgcatcaccaacg 409  Q
    |  |||||||||||||   | |||||||   ||||||| |||| |||  | ||||||||||||||| |||||  ||||||||||| ||| |||| ||||     
T  10599118 tgtaaacgaactaact---ccactaccaacatattcaacttcacggtccaagtcttgttcagaattcaaattaaaatctttcacatttgtatcatcaaca 10599214  T
Q  410 atcccactacccgaaaccaaattcttctcaaacaaaacatcaaaacacttgcgagcaccttccattctcccagaccttgcatacacactaacaagaccat 509  Q
    |   |  |  |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||| ||||||||||||||||||||||||    
T  10599215 a---ctgtctccgaaaccaaattcttctcaaacaaaacatcaaaacacttgcgagcagattccattcttccagactttgcatacacactaacaagaccat 10599311  T
Q  510 tccctacacaatcaatcgcagaaagacctaatttaatcgtttgcccgtgaacttgttcaccaaaatcaaaattaggaagactcgcacaagccttaagaac 609  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  10599312 tccctacacaatcaattgcagaaagacctaatttaatcgtttgcccatgaacctgttcaccaaaatcaaaatcaggaagactcgcacaagccttaagaac 10599411  T
Q  610 accagaaaacgtaaagcaatttggcgcaacacaaccctgaagcaacatatcgctaaacaatctcatagcttcccgttcat 689  Q
    ||| || ||||||||||| || |||||||||| |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  10599412 accggagaacgtaaagcagttcggcgcaacaccaccctgaagcaacatattactaaacattctcatagcttcccgttcat 10599491  T

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