View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10936_low_12 (Length: 240)
Name: NF10936_low_12
Description: NF10936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10936_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 28883822 - 28884045
Alignment:
| Q |
1 |
attccctcctctccgattcatcaaacgaagatacaaccggcggtgaagacacaatcgatgcactcgacgtaatcgaagaacaacaaacacaagaatcaac |
100 |
Q |
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|||| ||||||||||||||||| |||||||| || |||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
28883822 |
attctctcctctccgattcatccaacgaagacaccaccggcggcgaagatacaatcgacgcactcgacgtaatcgaagaacaacagacacaagaatcaac |
28883921 |
T |
|
| Q |
101 |
aaacgacgcagaagaagacgacgaaccaatcgaagaaacgaacaaagcttcaggctatttcttctaccacgtagaaggtgtaattcgaagatcattcagc |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28883922 |
aaacgacgcagaagaagacgacgaaccaattgaagaaacgaacaaagcttcaggctatttcttctaccacgtagaaggtgtaattcgaagatcattcagc |
28884021 |
T |
|
| Q |
201 |
aaacaatcaatgatgatgacaatg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
28884022 |
aaacaatcaatgatgatgacaatg |
28884045 |
T |
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