View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10936_low_13 (Length: 220)

Name: NF10936_low_13
Description: NF10936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10936_low_13
NF10936_low_13
[»] chr5 (5 HSPs)
chr5 (1-86)||(11116371-11116456)
chr5 (1-86)||(11108173-11108258)
chr5 (2-51)||(11111894-11111943)
chr5 (1-86)||(11109165-11109253)
chr5 (148-178)||(11116518-11116548)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 11116371 - 11116456
Alignment:
Q  1 gttggttcattctggaaggttgcagaaaggttccattgttaagctttctcagttcatctgtaacgttgttcagaatcgcaagtaag 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11116371 gttggttcattctggaaggttgcagaaaggttccattgttaagctttctcagttcatctgtaacgttgttcagaatcgcaagtaag 11116456  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 11108173 - 11108258
Alignment:
Q  1 gttggttcattctggaaggttgcagaaaggttccattgttaagctttctcagttcatctgtaacgttgttcagaatcgcaagtaag 86  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||| |||   ||||| || |||||||||||    
T  11108173 gttggttcataatggaaggttgcagaaaggttccattgttaagcttactcagttcatctataaacatgttcggactcgcaagtaag 11108258  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 11111894 - 11111943
Alignment:
Q  2 ttggttcattctggaaggttgcagaaaggttccattgttaagctttctca 51  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11111894 ttggttcattctggaaggttgcagaaaggttccattgttaagctctctca 11111943  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 11109165 - 11109253
Alignment:
Q  1 gttggttcattctggaaggttgcagaaaggttccattgttaagctttctcagttcatctgtaacgttgt---tcagaatcgcaagtaag 86  Q
    |||| ||||||||||||||||||||||||||||||||||||||||   | || |||||||||||| |||   |||||||| ||||||||    
T  11109165 gttgattcattctggaaggttgcagaaaggttccattgttaagctcaatgagatcatctgtaacgatgttaatcagaatctcaagtaag 11109253  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 11116518 - 11116548
Alignment:
Q  148 acatgtatagaaaatggtatctgaaattaga 178  Q
    |||||||||||||||||||||||||||||||    
T  11116518 acatgtatagaaaatggtatctgaaattaga 11116548  T

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