View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10936_low_3 (Length: 621)
Name: NF10936_low_3
Description: NF10936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10936_low_3 |
 | |
|
| [»] scaffold1408 (2 HSPs) |
| | |
|
| [»] scaffold0428 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 27)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 33263316 - 33263677
Alignment:
| Q |
1 |
taaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33263316 |
taaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtacctt |
33263415 |
T |
|
| Q |
101 |
cttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33263416 |
cttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattca |
33263515 |
T |
|
| Q |
201 |
tcccactcaacatatctcaatttgtttgaaagacaacttgagcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33263516 |
tcccactcaacatatctcaatttgtttgaaagacaacttgggcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttg |
33263615 |
T |
|
| Q |
301 |
acaagtgttcaacgtccacctcttcatcatccaaaactatggctttaacttgcttttcctaa |
362 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33263616 |
acaattgttcaacgtccacctcttcatcatccaaaactatggctttaacttgcttttcctaa |
33263677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 2 - 362
Target Start/End: Original strand, 33286228 - 33286591
Alignment:
| Q |
2 |
aaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttc |
101 |
Q |
| |
|
|||||| ||||||||| ||||||| ||||||||||||||| |||||| ||||||||||||||||| | ||| ||||||||| |||||||||||||||| |
|
|
| T |
33286228 |
aaaaatggagccattaatttgattttaagagaattgtttcaaatttgtttatatttctaagatga---acatttataataagataatttatagtaccttc |
33286324 |
T |
|
| Q |
102 |
ttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcat |
201 |
Q |
| |
|
|| ||| ||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||| || |
|
|
| T |
33286325 |
ttctttctccatagttgtttaatgttgctactatgcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggatatccag |
33286424 |
T |
|
| Q |
202 |
cccactcaacatatctcaatttgtttgaaagacaacttgagcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttga |
301 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| | |||||| ||||||| || || || |||||||||||||||||||||||||||||||||| |
|
|
| T |
33286425 |
tccactgaacatatcttaatttgtttgaaagactcaataggcttccggagatattcacaccccacatgatgatgagcaatctaagattactcatttttga |
33286524 |
T |
|
| Q |
302 |
caagtgttcaacgt------ccacctcttcatcatccaaaactatggctttaacttgcttttcctaa |
362 |
Q |
| |
|
|||||||||||| | | ||||||||||||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
33286525 |
caagtgttcaacattcaatccaacctcttcatcattcaaaactaaggctttaacatgcttttcctaa |
33286591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 33058251 - 33058572
Alignment:
| Q |
10 |
agccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttcttgttttt |
109 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33058251 |
agccattactttgattgtaagagaattgttttgaatttgtttatatttctaagatgataaatattaataataatagaatttatagtaccttcttgttttt |
33058350 |
T |
|
| Q |
110 |
ccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcatcccactca |
209 |
Q |
| |
|
|||||||||| |||||||||| | | |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | ||| | | |
|
|
| T |
33058351 |
ccatagttgtttaatgttgctctccgtcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttggaaggatatctaaaccagtga |
33058450 |
T |
|
| Q |
210 |
acatatctcaatttgtttgaaagacaacttgagcttcctgaga---tatacattccgtacctgatgatgagcaatctaagattactcatttttgacaagt |
306 |
Q |
| |
|
||| |||| |||||||| |||||||| |||| | |||| | | | | || || ||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
33058451 |
acaaatcttaatttgttcgaaagacagcttgggaatcctaacatcgttgaaatatagttggcgatgaagagcaatctgagattactcatttttgacaagt |
33058550 |
T |
|
| Q |
307 |
gttcaacgtccacctcttcatc |
328 |
Q |
| |
|
|||||| |||| |||||||||| |
|
|
| T |
33058551 |
gttcaaagtccgcctcttcatc |
33058572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 70 - 327
Target Start/End: Original strand, 33401368 - 33401625
Alignment:
| Q |
70 |
atattaataataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaa |
169 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
33401368 |
atataaataataagagaatttatagtaccttcttgtttttccatagttgtttaatgttgctacaccacaagatcaattctacaagttcattggggtgaaa |
33401467 |
T |
|
| Q |
170 |
acttgatggcaaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaagacaacttgagcttcctgagatatacattccgtacctg |
269 |
Q |
| |
|
||||| |||||||||||| |||||||||||| ||| ||||||||||| |||| |||||||||| || |||||| ||||||||||| | | || || |
|
|
| T |
33401468 |
acttgttggcaaatacttgaaaggatattcatgccaatcaacatatcttaattcgtttgaaagaaaatttgagcctcctgagatattccaattgcacttg |
33401567 |
T |
|
| Q |
270 |
atgatgagcaatctaagattactcatttttgacaagtgttcaacgtccacctcttcat |
327 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
33401568 |
atgatgagaagtctaagattactcatttttgataagtgttcaacatccacctcttcat |
33401625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 31562213 - 31561982
Alignment:
| Q |
2 |
aaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttc |
101 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| |||||| ||||| ||||||||| || || ||||||||||| |||||| ||||||||| |
|
|
| T |
31562213 |
aaaaatagagccattactttgattaaaagataattgtttctaatttgtttatagttctaagataat---tagtaataataagataatttacagtaccttc |
31562117 |
T |
|
| Q |
102 |
ttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcat |
201 |
Q |
| |
|
|||||| |||||||||| |||||| ||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31562116 |
ttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaa |
31562017 |
T |
|
| Q |
202 |
cccactcaacatatctcaatttgtttgaaagacaa |
236 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| |
|
|
| T |
31562016 |
gccactcaacatatcttaatttgttcgaaagacaa |
31561982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 455 - 605
Target Start/End: Original strand, 33263790 - 33263940
Alignment:
| Q |
455 |
gctactttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaat |
554 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33263790 |
gctactttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcatgaactattttgcacaat |
33263889 |
T |
|
| Q |
555 |
ttttctggctagctcttccaacaaagaatgcattataattcttgaattact |
605 |
Q |
| |
|
||||| | ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33263890 |
ttttcggcctagctcttgcaacaaagaatgcattataattcttgaattact |
33263940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 33305178 - 33305472
Alignment:
| Q |
14 |
attactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttcttgtttttccat |
113 |
Q |
| |
|
|||||||||| ||| ||| ||||||||| | |||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33305178 |
attactttgactatgagataattgtttcaattttgtttatatttctaagataa---acattaataataagagaatttatagtaccttcttgtttgtccat |
33305274 |
T |
|
| Q |
114 |
agttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcatcccactcaacat |
213 |
Q |
| |
|
|||||| ||| ||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| ||||||| |
|
|
| T |
33305275 |
agttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacat |
33305374 |
T |
|
| Q |
214 |
atctcaatttgtttgaaagacaacttgagcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttgacaagtgttca |
311 |
Q |
| |
|
|| | ||||||||||||| || | || ||||||||||| || |||||| ||| |||||| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
33305375 |
attttaatttgtttgaaaaactccatggacttcctgagatgcacccaccgtacttgaagatgaggaatctaagattattcatttttgacacgtgttca |
33305472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 2 - 315
Target Start/End: Original strand, 9167449 - 9167753
Alignment:
| Q |
2 |
aaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttc |
101 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| || || ||||||||||||| ||||||||||||| |
|
|
| T |
9167449 |
aaaaatagagccattactttgattgtaagaaaattgtttcgaatttgtttatatttctaa---aataaacggtaataataagagagtttatagtaccttt |
9167545 |
T |
|
| Q |
102 |
ttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcat |
201 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| || |||||||||||||| ||||||||| |||||||||||||| |||||||| || |
|
|
| T |
9167546 |
ttgtttttccatagttgtttaatgttgctccagttcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaatacttgaaaggatatcgat |
9167645 |
T |
|
| Q |
202 |
cccactcaacatatctcaatttgtttgaaagacaacttgagcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttga |
301 |
Q |
| |
|
|||||||| |||||| |||| ||| ||||||| || || | |||||| | ||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
9167646 |
accactcaagatatcttaattcgttcgaaagactacatg------gtaagatattccaaccgtatttgatgatgagcaatctaagactactcatttttga |
9167739 |
T |
|
| Q |
302 |
caagtgttcaacgt |
315 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9167740 |
caagtgttcaacgt |
9167753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 2 - 361
Target Start/End: Original strand, 33272484 - 33272841
Alignment:
| Q |
2 |
aaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatag-tacctt |
100 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||||||| |||||| ||||||||||||||| | | |||||||||| |||||||||| |||||| |
|
|
| T |
33272484 |
aaaaatagaaccattacattgattctaagagaattgtttcaaatttgtttatatttctaagataa---acattaataata---gaatttataggtacctt |
33272577 |
T |
|
| Q |
101 |
cttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattca |
200 |
Q |
| |
|
||||||||||||||||||| | |||| ||| |||| |||||||||||||| ||| ||||||||||||||||||| ||| | | |||| |||||||| || |
|
|
| T |
33272578 |
cttgtttttccatagttgtttgatgtcgctattcatcaagatcaattctataaggtcattggggtgaaaacttgttggtagacacttgaaaggatatcca |
33272677 |
T |
|
| Q |
201 |
tcccactcaacatatctcaatttgtttgaaagacaacttgagcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttg |
300 |
Q |
| |
|
||||||||||||||||| ||| |||||||| | | || |||| ||||| | ||| || |||| |||||||||||||||||||||||||||| |
|
|
| T |
33272678 |
tcccactcaacatatcttaatgcatttgaaaggctcgatagactacctgggatattccgaccgcacttgattatgagcaatctaagattactcatttttg |
33272777 |
T |
|
| Q |
301 |
acaagtgttcaacgtccacctcttcatca-tccaaa--actatggctttaacttgcttttccta |
361 |
Q |
| |
|
||||||||||||| |||| ||||||| | |||||| ||||||||| ||| ||||||||||| |
|
|
| T |
33272778 |
ccaagtgttcaacgaccacttcttcataactccaaagttctatggcttcaacatgcttttccta |
33272841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 33359409 - 33359752
Alignment:
| Q |
13 |
cattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttcttgtttttcca |
112 |
Q |
| |
|
|||| ||||||||| |||| |||| ||| |||| | |||||||||||| || | | |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33359409 |
cattgctttgattaaaagataattattttcaattggtttatatttctaaaataa---acattaataataagagaatttatattaccttcttgtttttcca |
33359505 |
T |
|
| Q |
113 |
tagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcatcccactcaaca |
212 |
Q |
| |
|
||||||| ||||| |||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||| | ||||||| || | |
|
|
| T |
33359506 |
tagttgtttaatgctgcttttcttcaagatcaattctacaagttcattggagttaaaacttgttggcaaatactggcaaggatatgcctcccactgaata |
33359605 |
T |
|
| Q |
213 |
tatctcaatttgtttgaaagacaacttgagcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttgacaagtgttcaa |
312 |
Q |
| |
|
|||| ||| ||||||||||| ||| ||||| ||||||||| | | | |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33359606 |
aatcttaatgcgtttgaaagactcgttgggcttcttgagatata---tgcat---tgatgatgagcactctaagattactcatttttgacaagtgttcaa |
33359699 |
T |
|
| Q |
313 |
cgtccac---ctcttcatcatccaaaactatggctttaacttgcttttcctaa |
362 |
Q |
| |
|
|||||| || ||||| | |||||||||||||| ||| || ||||||||| |
|
|
| T |
33359700 |
agtccaccatcttttcatgaatcaaaactatggcttcaacatgtttttcctaa |
33359752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 458 - 588
Target Start/End: Original strand, 33286686 - 33286816
Alignment:
| Q |
458 |
actttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaatttt |
557 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33286686 |
actttaccatattctccaacataacattgtagagttgttctgtggaccacaacctgctccattttcttggctctttgcttgaactattttgcacaatttt |
33286785 |
T |
|
| Q |
558 |
tctggctagctcttccaacaaagaatgcatt |
588 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |
|
|
| T |
33286786 |
tctgcctagctcttccaacaaagaatgcatt |
33286816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 79 - 313
Target Start/End: Complemental strand, 33643935 - 33643701
Alignment:
| Q |
79 |
ataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatgg |
178 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| ||||| |||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
33643935 |
ataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatgg |
33643836 |
T |
|
| Q |
179 |
caaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaagacaacttgagcttcctgagatatacattccgtacctgatgatgagc |
278 |
Q |
| |
|
|||| || | ||||||| || ||| ||||||||||| |||| |||||||||||||||| |||| || |||||| | ||| || | ||||| ||| |
|
|
| T |
33643835 |
caaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaacttgggctttctaagatatgccaaccgcactttatgatcagc |
33643736 |
T |
|
| Q |
279 |
aatctaagattactcatttttgacaagtgttcaac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
33643735 |
aatctaagattactcatttttgacaagtattcaac |
33643701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 90 - 331
Target Start/End: Original strand, 33388809 - 33389050
Alignment:
| Q |
90 |
tatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttg |
189 |
Q |
| |
|
|||| |||||||||||| |||||||||||| | |||| ||| | || ||||||||| |||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
33388809 |
tataataccttcttgttcttccatagttgtttgatgtcgctatacatcaagatcaactctacaagatcactggggtgaaaacttgatggcaaatacttga |
33388908 |
T |
|
| Q |
190 |
aaggatattcatcccactcaacatatctcaatttgtttgaaagacaacttgagcttcctgagatatacattccgtacctgatgatgagcaatctaagatt |
289 |
Q |
| |
|
||||||| | || ||||||||||||||| ||| |||||||||||| || ||| | || ||||| | || || |||||||||| ||||||||||| |
|
|
| T |
33388909 |
aaggataataattccactcaacatatcttaatgtgtttgaaagactcgatgggctacttgggatattcggaccccacttgatgatgagtaatctaagatt |
33389008 |
T |
|
| Q |
290 |
actcatttttgacaagtgttcaacgtccacctcttcatcatc |
331 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
33389009 |
actcatttttgacaactgttcaacgtccacctcttcaacatc |
33389050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 461 - 588
Target Start/End: Original strand, 33401761 - 33401888
Alignment:
| Q |
461 |
ttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaatttttct |
560 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
33401761 |
ttaccatattctccatcttaacatcgtagagttgttttgcagaccacaacctgctccattttcttggctctttgcttgaagttttttgcacaatttttct |
33401860 |
T |
|
| Q |
561 |
ggctagctcttccaacaaagaatgcatt |
588 |
Q |
| |
|
| ||||||||| |||||||||||||||| |
|
|
| T |
33401861 |
gcctagctctttcaacaaagaatgcatt |
33401888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 458 - 587
Target Start/End: Original strand, 33058707 - 33058836
Alignment:
| Q |
458 |
actttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaatttt |
557 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||| ||||| || |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33058707 |
actttaccatattctccaacataacatcgtagagttgttctgtggaccacaacctgctccattttcttggttctttgcttgaactattttgcacaatttt |
33058806 |
T |
|
| Q |
558 |
tctggctagctcttccaacaaagaatgcat |
587 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
33058807 |
tctgcctagctcttccaacaaagaatgcat |
33058836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 460 - 599
Target Start/End: Original strand, 33272938 - 33273077
Alignment:
| Q |
460 |
tttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaatttttc |
559 |
Q |
| |
|
|||||||| ||||||||| ||||||||| || ||||||| ||||||||| ||| ||||| |||||| |||||||||||||| | | |||||||||||||| |
|
|
| T |
33272938 |
tttaccattttctccatcgtaacattgttgagttgtttttcggaccacaccctgctccactttcttcgctctttgcttgaattttcttgcacaatttttc |
33273037 |
T |
|
| Q |
560 |
tggctagctcttccaacaaagaatgcattataattcttga |
599 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
33273038 |
tgcccagctcttccaacaaagaatgcattataattgttga |
33273077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 458 - 603
Target Start/End: Complemental strand, 31561745 - 31561600
Alignment:
| Q |
458 |
actttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaatttt |
557 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| ||||| |||||||||||| ||||| |||||| |||||||||||||||| | |||||||||||| |
|
|
| T |
31561745 |
actttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttctttgctctttgcttgaactttcttgcacaatttt |
31561646 |
T |
|
| Q |
558 |
tctggctagctcttccaacaaagaatgcattataattcttgaatta |
603 |
Q |
| |
|
|||| |||| |||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
31561645 |
tctgcctagttcttccaacaaataatgcattttaattattgaatta |
31561600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 457 - 593
Target Start/End: Original strand, 33411095 - 33411231
Alignment:
| Q |
457 |
tactttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaattt |
556 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| ||||||| |||||| | ||| ||||| |||||| |||||||||||||| | | ||||||||||| |
|
|
| T |
33411095 |
tactttaccatattctccatcataacgttgtagagttgttttttggaccagatcctgctccactttctttgctctttgcttgaattttcttgcacaattt |
33411194 |
T |
|
| Q |
557 |
ttctggctagctcttccaacaaagaatgcattataat |
593 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
33411195 |
ttctgcctagctcttccaacaaagaatgcattttaat |
33411231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 456 - 593
Target Start/End: Original strand, 9167913 - 9168050
Alignment:
| Q |
456 |
ctactttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaatt |
555 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||| |||||||||||| |||||||||||||| | | |||||||||| |
|
|
| T |
9167913 |
ctactttaccatactctccatcgcaacattgtagagttgttttttggaccacaacctgctccattttctttgctctttgcttgaattttcttgcacaatt |
9168012 |
T |
|
| Q |
556 |
tttctggctagctcttccaacaaagaatgcattataat |
593 |
Q |
| |
|
|||||| | |||||||| |||||| |||||||| |||| |
|
|
| T |
9168013 |
tttctgcccagctcttctaacaaataatgcattttaat |
9168050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 457 - 584
Target Start/End: Original strand, 33305629 - 33305756
Alignment:
| Q |
457 |
tactttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaattt |
556 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| ||| ||| |||||| | ||| ||||| |||||| |||||||||||||| | | ||||||||||| |
|
|
| T |
33305629 |
tactttaccatattctccaccataacattgtagagttgctttttggaccagaccctgctccactttctttgctctttgcttgaattttcttgcacaattt |
33305728 |
T |
|
| Q |
557 |
ttctggctagctcttccaacaaagaatg |
584 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
33305729 |
ttctgcctagctcttccaacaaagaatg |
33305756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 460 - 588
Target Start/End: Original strand, 33389215 - 33389343
Alignment:
| Q |
460 |
tttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaatttttc |
559 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| ||||||| |||||||| ||| ||||| |||||| |||||||||||||| | | | |||||||||||| |
|
|
| T |
33389215 |
tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc |
33389314 |
T |
|
| Q |
560 |
tggctagctcttccaacaaagaatgcatt |
588 |
Q |
| |
|
|| ||||||| |||| |||||||||||| |
|
|
| T |
33389315 |
tgcctagctcaaccaataaagaatgcatt |
33389343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 460 - 588
Target Start/End: Complemental strand, 33643539 - 33643411
Alignment:
| Q |
460 |
tttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaatttttc |
559 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||| |||||||| ||| ||||| |||||| |||||||||||||| | | ||||||||||||| |
|
|
| T |
33643539 |
tttaccatattctccatcacaacattgtagatttgttttttggaccacagcctgctccactttctttgctctttgcttgaattttcttgcacaatttttt |
33643440 |
T |
|
| Q |
560 |
tggctagctcttccaacaaagaatgcatt |
588 |
Q |
| |
|
| |||||||||| |||| |||||||||| |
|
|
| T |
33643439 |
ttcctagctcttctaacagagaatgcatt |
33643411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 84 - 238
Target Start/End: Original strand, 33410701 - 33410855
Alignment:
| Q |
84 |
agaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaat |
183 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | | | |||| ||| |||||||||||| ||||||||||| |||||||||||| ||||||| | |
|
|
| T |
33410701 |
agaatttatagtaccttcttgcttttccatagttgtttgaagctgctattcttcaagatcaattcaacaagttcattagggtgaaaacttaatggcaatt |
33410800 |
T |
|
| Q |
184 |
actttgaaggatattcatcccactcaacatatctcaatttgtttgaaagacaact |
238 |
Q |
| |
|
| ||||||| | ||||| |||| ||| || |||||||||||||||||||| |
|
|
| T |
33410801 |
cccagaaaggataatgctcccagtcaaaataccttaatttgtttgaaagacaact |
33410855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 33399708 - 33399785
Alignment:
| Q |
1 |
taaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaata |
78 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||| |||| |
|
|
| T |
33399708 |
taaaaacagagacattactttgattataaaagaattgtttcgaatttgtttatatttctaagatgataaatatcaata |
33399785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 33410916 - 33410962
Alignment:
| Q |
269 |
gatgatgagcaatctaagattactcatttttgacaagtgttcaacgt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33410916 |
gatgatgagcaatctaagattactcatttttgaaaagtgttcaacgt |
33410962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 33410642 - 33410703
Alignment:
| Q |
2 |
aaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaaga |
63 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||| ||||||| |||||| ||||||| |
|
|
| T |
33410642 |
aaaaatagagacattactttgattataacagaattgttttgaatttgtttatatctctaaga |
33410703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 31561935 - 31561898
Alignment:
| Q |
268 |
tgatgatgagcaatctaagattactcatttttgacaag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31561935 |
tgatgatgagcaatctaagattactcatttttgacaag |
31561898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 2 - 362
Target Start/End: Complemental strand, 17440228 - 17439864
Alignment:
| Q |
2 |
aaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaat-aataagagaatttatagtacctt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||| ||||| | | |||||| ||||||||||||||| ||||||| |
|
|
| T |
17440228 |
aaaaatagagccattacattgattataagaaaattgtttcgaatttgtttatatttcaaagataa---acattaattaataagagaatttatggtacctt |
17440132 |
T |
|
| Q |
101 |
cttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattca |
200 |
Q |
| |
|
||||||||||||||| | | |||||||||| |||| ||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| | |
|
|
| T |
17440131 |
cttgtttttccataggtttttaatgttgctcccatccaaaatcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggatattta |
17440032 |
T |
|
| Q |
201 |
tcccactcaacatatctcaatttgtttgaaagacaacttgagcttcctgagata--taca-ttccgtacctgatgatgagcaatctaagattactcattt |
297 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| | |||||||||| | || | || ||||||||||||||||||||||||||||| |
|
|
| T |
17440031 |
ggccactcaacatatcttaatttgttcgaaagacaacttgggaatcctgagatagttgcagtatggttgacgatgatgagcaatctaagattactcattt |
17439932 |
T |
|
| Q |
298 |
ttgacaagtgttcaacgtccacctcttc---atcatccaaaactatggctttaacttgcttttcctaa |
362 |
Q |
| |
|
||||||| |||||| ||||||||||||| || | |||||||||||||| ||| |||||||||||| |
|
|
| T |
17439931 |
ttgacaaatgttcagcgtccacctcttcagtatatttcaaaactatggcttcaacatgcttttcctaa |
17439864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 458 - 588
Target Start/End: Complemental strand, 17439764 - 17439634
Alignment:
| Q |
458 |
actttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaatttt |
557 |
Q |
| |
|
|||||||||| ||| |||| |||||| |||| ||||| || ||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
17439764 |
actttaccattttcgccataataacatcatagagttgttctgtagaccacaacctgctccattttcttgggtcattgcttgaactattttgcacaatttt |
17439665 |
T |
|
| Q |
558 |
tctggctagctcttccaacaaagaatgcatt |
588 |
Q |
| |
|
|||| | |||||||||||||||||||||||| |
|
|
| T |
17439664 |
tctgcccagctcttccaacaaagaatgcatt |
17439634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 1385 - 1540
Alignment:
| Q |
79 |
ataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatgg |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1385 |
ataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatgg |
1484 |
T |
|
| Q |
179 |
caaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaagac |
234 |
Q |
| |
|
|| |||||| |||||||| || ||| | |||||||| ||||||||||| |||| |
|
|
| T |
1485 |
cagatacttgaaaggatatccagtccattgaacatatcgtaatttgtttgatagac |
1540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 1596 - 1635
Alignment:
| Q |
266 |
cctgatgatgagcaatctaagattactcatttttgacaag |
305 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
1596 |
cctgatgattagcaatctaagattactcattgttgacaag |
1635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 7131 - 7286
Alignment:
| Q |
79 |
ataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatgg |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7131 |
ataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatgg |
7230 |
T |
|
| Q |
179 |
caaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaagac |
234 |
Q |
| |
|
|| |||||| |||||||| || ||| | |||||||| ||||||||||| |||| |
|
|
| T |
7231 |
cagatacttgaaaggatatccagtccattgaacatatcgtaatttgtttgatagac |
7286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 461 - 588
Target Start/End: Original strand, 7907 - 8034
Alignment:
| Q |
461 |
ttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaatttttct |
560 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| | |||||||| ||| ||||| |||||| |||||||||||||| | | ||||||||||||||| |
|
|
| T |
7907 |
ttaccatattctccatcgtaacattgtagagttgttgtttggaccacatcctgctccactttctttgctctttgcttgaattttcttgcacaatttttct |
8006 |
T |
|
| Q |
561 |
ggctagctcttccaacaaagaatgcatt |
588 |
Q |
| |
|
| ||| |||||||||||||||||||||| |
|
|
| T |
8007 |
gcctaactcttccaacaaagaatgcatt |
8034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 7342 - 7381
Alignment:
| Q |
266 |
cctgatgatgagcaatctaagattactcatttttgacaag |
305 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
7342 |
cctgatgattagcaatctaagattactcattgttgacaag |
7381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 456 - 588
Target Start/End: Complemental strand, 31503053 - 31502921
Alignment:
| Q |
456 |
ctactttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaatt |
555 |
Q |
| |
|
|||||||||||| ||||||| | | ||||||| || |||| || | |||||||||| ||||| ||||||||||||||||||||| | | ||| |||||| |
|
|
| T |
31503053 |
ctactttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaattttcttgaacaatt |
31502954 |
T |
|
| Q |
556 |
tttctggctagctcttccaacaaagaatgcatt |
588 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| |
|
|
| T |
31502953 |
tttcttcctagctcttccaacaaaccatgcatt |
31502921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 81 - 197
Target Start/End: Original strand, 31157992 - 31158108
Alignment:
| Q |
81 |
aagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggca |
180 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| | | | |||| | | || ||||||||| ||||||| |||||| ||||||| || ||||| |
|
|
| T |
31157992 |
aagagaatttatagtaccttcttgtctttccatagttgtttgacgctgctatgcctcatgatcaattcaacaagttgattgggctgaaaacatgctggca |
31158091 |
T |
|
| Q |
181 |
aatactttgaaggatat |
197 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
31158092 |
aatacttgaaaggatat |
31158108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 81 - 233
Target Start/End: Complemental strand, 31491114 - 31490962
Alignment:
| Q |
81 |
aagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggca |
180 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||| |||| || ||||||||||| |||||||| | ||| |||||||||| | |
|
|
| T |
31491114 |
aagagaatttatagtaccttcttgtctttccatagttgtgtgatgctgctacctactaagatcaattcggaaagttcatcaagctgagaacttgatggta |
31491015 |
T |
|
| Q |
181 |
aatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaaga |
233 |
Q |
| |
|
||||| |||||||||||||||| |||| |||||| ||||| || |||||| |
|
|
| T |
31491014 |
aatacaagaaaggatattcatcccattcaagatatcttaatttattagaaaga |
31490962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 31503459 - 31503299
Alignment:
| Q |
76 |
ataataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttga |
175 |
Q |
| |
|
||||| |||| ||||| ||||||||||||| || ||||| |||| ||| |||| || ||||||||| || ||||||| ||| || ||||||||||| |
|
|
| T |
31503459 |
ataattagaggatttagagtaccttcttgtcttcccataattgttcgatgctgctactcttcaagatcaactcaacaagttgatttggctgaaaacttga |
31503360 |
T |
|
| Q |
176 |
tggcaaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaagacaa |
236 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||||||||| |||| ||| ||||||||| |
|
|
| T |
31503359 |
cggcaaatacttgaaaggatattcactccattcaacatatcttaattcgttagaaagacaa |
31503299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 75 - 217
Target Start/End: Original strand, 31149112 - 31149254
Alignment:
| Q |
75 |
aataataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttg |
174 |
Q |
| |
|
||||| |||||||| |||||||||||||| | ||||||||| ||| | | |||| | | |||||||||||| ||||||| ||| || ||||||||| |
|
|
| T |
31149112 |
aataaaaagagaatgtatagtaccttcttatctttccatagctgtttgacactgctatacctcaagatcaattcgacaagttgattaggcagaaaacttg |
31149211 |
T |
|
| Q |
175 |
atggcaaatactttgaaggatattcatcccactcaacatatct |
217 |
Q |
| |
|
||||||||||||| |||||||| || |||||| |||||||| |
|
|
| T |
31149212 |
atggcaaatacttgaaaggatatctattccactcgacatatct |
31149254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 136 - 310
Target Start/End: Complemental strand, 31478249 - 31478075
Alignment:
| Q |
136 |
ccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaagaca |
235 |
Q |
| |
|
||||||||||||| ||||||| ||| | || |||||| |||||||||||||| ||||||||||| ||||||||||||||| | || || |||| ||| |
|
|
| T |
31478249 |
ccaagatcaattcaacaagttgattagagtcaaaactcgatggcaaatacttgaaaggatattcactccactcaacatatcttagttctttagaaaaaca |
31478150 |
T |
|
| Q |
236 |
acttgagcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttgacaagtgttc |
310 |
Q |
| |
|
||| | |||||||| | | || |||||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
31478149 |
actaaggtttcctgaggtgttcacaggacacctgacgatgagcaatctaagatgtctcattttagacaagtgttc |
31478075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 31033070 - 31033139
Alignment:
| Q |
153 |
agttcattggggtgaaaacttgatggcaaatactttgaaggatattcatcccactcaacatatctcaatt |
222 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
31033070 |
agttgattggggtgaaaacttgtaggcaaatacatgaaaggatattcagtccactcaacatatctcaatt |
31033139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 31484136 - 31484035
Alignment:
| Q |
84 |
agaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaat |
183 |
Q |
| |
|
||||| ||||||||||||||| || ||| |||||| | ||| |||| | ||||| ||||||||| ||||||| |||||| ||||| |||||||||||| |
|
|
| T |
31484136 |
agaatatatagtaccttcttgccttcccagagttgtttgatgctgctatccaccatgatcaattcaacaagttgattgggccgaaaatttgatggcaaat |
31484037 |
T |
|
| Q |
184 |
ac |
185 |
Q |
| |
|
|| |
|
|
| T |
31484036 |
ac |
31484035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 456 - 577
Target Start/End: Complemental strand, 31497858 - 31497737
Alignment:
| Q |
456 |
ctactttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaatt |
555 |
Q |
| |
|
|||||||||||||||||||| | |||||| ||||||||||| | |||||||||| ||||| |||||| ||| ||||||||| | | ||| ||||| |
|
|
| T |
31497858 |
ctactttaccatattctccaacataacatcgtagaattgttctttcaaccacaacctgctccactttcttctctccttgcttgaattttcttgaacaata |
31497759 |
T |
|
| Q |
556 |
tttctggctagctcttccaaca |
577 |
Q |
| |
|
|||||| |||| |||| ||||| |
|
|
| T |
31497758 |
tttctgcctagttcttgcaaca |
31497737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 31498136 - 31498063
Alignment:
| Q |
165 |
tgaaaacttgatggcaaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaagacaact |
238 |
Q |
| |
|
|||||| ||||||| |||||| | |||||||||||| |||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
31498136 |
tgaaaatttgatggtaaatacatgaaaggatattcatgccactcaaaatatcttaatttgttggaaagacaact |
31498063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 579
Target Start/End: Complemental strand, 31477907 - 31477789
Alignment:
| Q |
461 |
ttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcttgaactattttgcacaatttttct |
560 |
Q |
| |
|
||||||| ||||||| | | |||| || || ||||||| || |||| | ||| ||||| |||||| |||||||||||||| | | ||| ||||||| ||| |
|
|
| T |
31477907 |
ttaccattttctccaacatgacatcgttgacttgttttacgaaccatatcctcctccagtttctttgctctttgcttgaattttcttgaacaatttctct |
31477808 |
T |
|
| Q |
561 |
ggctagctcttccaacaaa |
579 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
31477807 |
ccctagctcttccaacaaa |
31477789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 31527232 - 31527318
Alignment:
| Q |
136 |
ccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcatcccactcaacatatctcaatt |
222 |
Q |
| |
|
|||||||||| || ||||||| | ||| ||||||||||||||||||||| | |||||||||| ||||||||||||||| |||| |
|
|
| T |
31527232 |
ccaagatcaactcaacaagttggtagggttgaaaacttgatggcaaatacatgaaaggatattcccgccactcaacatatcttaatt |
31527318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 579
Target Start/End: Original strand, 31149482 - 31149604
Alignment:
| Q |
457 |
tactttaccatattctccatcttaacattgtagaattgttttgcgga-ccacaacctactccattttcttggctctttgcttgaactattttgcacaatt |
555 |
Q |
| |
|
|||||||||||||||||| | ||||||| |||||||| || | ||| ||||| ||| ||||| ||||||| ||||||| |||| | | ||| |||||| |
|
|
| T |
31149482 |
tactttaccatattctccgacataacattatagaattgctt-gtggagccacatcctgctccactttcttgactctttgattgatttttcttgaacaatt |
31149580 |
T |
|
| Q |
556 |
tttctggctagctcttccaacaaa |
579 |
Q |
| |
|
|||||| | ||||||| ||||||| |
|
|
| T |
31149581 |
tttctgccaagctcttgcaacaaa |
31149604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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