View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10936_low_4 (Length: 578)
Name: NF10936_low_4
Description: NF10936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10936_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 9 - 572
Target Start/End: Original strand, 43465163 - 43465729
Alignment:
| Q |
9 |
cacagaatcctcataggttccttgaatttgaaccacatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctcc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43465163 |
cacagaatcctcataggttccttgaatttgaaccacatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctcc |
43465262 |
T |
|
| Q |
109 |
ttacacaaaagcttcctcttagggattgatttgcatgcatagagtttccctgtggatttgtgtgtgcatagatatgttgtcccaaattgtccttgtccaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43465263 |
ttacacaaaagcttcctcttagggattgatttgcatgcatagagtttccctgtggatttgtgtgtgcatagatatgttgtcccaaattgtccttgtccaa |
43465362 |
T |
|
| Q |
209 |
gtttcttcccaagaaggtaatgatcccttaatcttggtgtttgatagggtaacacagcagtgcattttgatgatgattttgatgatcctaaattatgttt |
308 |
Q |
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| T |
43465363 |
gtttcttcccaagaaggtaatgatcccttaatcttggtgtttgatagggtaacacagcagtgcattttgatgatgattttgatgatcctaaattatgttt |
43465462 |
T |
|
| Q |
309 |
ctgcatctcaattcaattgggtttgatctaaagatgtttaagattgtttctttacacttttatgtctcttttcttctctcttcaacaaaacaagattgtg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43465463 |
ctgcatctcaattcaattgggtttgatctaaagatgtttaagattgtttctttacacttttatgtctcttttcttctctcttcaacaaaacaagattgtg |
43465562 |
T |
|
| Q |
409 |
nnnnnnngttggtttgtcatatgccaccaatta-tttacttttttgagtgttgtgcaacaattgtcaatacaacaatcattcttgtttggattggaattt |
507 |
Q |
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| T |
43465563 |
tttttttgttggtttgttatatgccaccaattattttacttttttgagtgttgtgcaacaattgtcaatacaacaatcattcttgtttggattggaattt |
43465662 |
T |
|
| Q |
508 |
gaggctgaatttattggtggagaagcaacttcattataggtgtgt--gggtgatctagccttctata |
572 |
Q |
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| T |
43465663 |
gaggctgaatttattggtggagaagcaacttcattataggtgtgtgggggtgatctagccttctata |
43465729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 23287571 - 23287640
Alignment:
| Q |
43 |
acatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctccttac |
112 |
Q |
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| T |
23287571 |
acatttggatgttcagataaatggtgcattatttgaatctctctccaaacatcatcataatcctctttac |
23287640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 23255843 - 23255782
Alignment:
| Q |
46 |
tttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctc |
107 |
Q |
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| T |
23255843 |
tttggatgttcagataaatggtgcattatctaaatctctctccagacatcatcataatcctc |
23255782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 23286995 - 23286931
Alignment:
| Q |
43 |
acatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctc |
107 |
Q |
| |
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| T |
23286995 |
acatttggatgttcagataaatggtgcattatctaaatctctgtccaaacatcatcataatcctc |
23286931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 23256572 - 23256636
Alignment:
| Q |
43 |
acatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctc |
107 |
Q |
| |
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| T |
23256572 |
acatttggatgttcagataaatggtgcattttttgaatctctctctaaacatcatcataatcctc |
23256636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 44766812 - 44766643
Alignment:
| Q |
43 |
acatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctccttacacaaaagcttcctcttagggattgatttgc |
142 |
Q |
| |
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|||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||| |||| | ||||||||||| |
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| T |
44766812 |
acatttggatgttcggataaatggtgcattatttgaatctctctccaagcatcatcataatcctctttacacaaaagcttcttctttgagattgatttgc |
44766713 |
T |
|
| Q |
143 |
atgcatagagtttccctgtggatttgtgtgtgcatagatatgttgtcccaaattgtccttgtccaagttt |
212 |
Q |
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| T |
44766712 |
aagcgtaggttctacccgttgagttgtgtgtgcagtgatatgtgatcccaaattgaccttgacccagttt |
44766643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 44756719 - 44756550
Alignment:
| Q |
43 |
acatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctccttacacaaaagcttcctcttagggattgatttgc |
142 |
Q |
| |
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|||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || || ||||||||| |||| | ||||||||||| |
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| T |
44756719 |
acatttggattttcagacaaatggtgcattatctgaatctctctccaaacatcatcataatcctctttgcataaaagcttcttctttgagattgatttgc |
44756620 |
T |
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| Q |
143 |
atgcatagagtttccctgtggatttgtgtgtgcatagatatgttgtcccaaattgtccttgtccaagttt |
212 |
Q |
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| T |
44756619 |
aagcgtaggttctacccgttgagttgtgtatgcagtgatatgtgatcccaaattgaccttgacccagttt |
44756550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 39940180 - 39939980
Alignment:
| Q |
12 |
agaatcctcataggttccttgaatttgaaccacatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctcctta |
111 |
Q |
| |
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|||||||||||| ||||||| ||| ||| || | ||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| || || |
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| T |
39940180 |
agaatcctcatacgttccttctattctaacaacgtgaggatgttcagataaatgatgcattatctgaatctctctccaaacatcttcataatcttctttg |
39940081 |
T |
|
| Q |
112 |
cacaaaagcttcctcttagggattgatttgcatgcatagagtttccctgtggatttgtgtgtgcatagatatgttgtcccaaattgtccttgtccaagtt |
211 |
Q |
| |
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|| |||||||| ||||| |||||||||||||| ||| | ||| || |||||||||||||||||||| ||||| || ||||| ||||| || |||| |
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| T |
39940080 |
cagaaaagctttctctttgggattgatttgcaagcaaattttttgttggttgatttgtgtgtgcatagataggttgttccgaattgaccttgaccgagtt |
39939981 |
T |
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| Q |
212 |
t |
212 |
Q |
| |
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| |
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|
| T |
39939980 |
t |
39939980 |
T |
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